Ss1.1-rfat0106_l15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAACGCGAAGGAGTTCAACCCTCGTTCCTTTTCTCAGCCAAAGCCTTCTACCACCCCA ACCTCACCTCGTCCTCAAGCACAACCTAGCCCATCTATGGTGGGTCATCAGCAGCCAACT CCAGTTTATACTCAACCTGTTTGTTTTGCACCAAATATGATGTATCCAGTCCCAGTGAGC CCAGGTGTGCAACCTTTATATCCTATACCTATGACGCCCATGCCAGTGAATCAAGCCAAG ACATATAGAGCAGTACCAAATATACCCCAACAACGGCAAGACCAGCATCATCAGAGCACC ATGATGCATCCAGCCTCAGCAGCAGGTCCACCAATTGTTGCCACCCCACCAGCTTATTCC ACACAATATGTTGCCTATAGTCCTCAGCAGTTTCCAAATCAACCTCTTGTTCAGCATGTG CCACATTATCAGTCTCAGCATCCTCATGTCTATAGTCCTGTAATACAGGGTAATGCTAGA ATGATGGCACCACCAACACATGCCCAGCCTGGTTTAGTATCTTCTTCAGCAACTCAGTAC GGGGCTCATGAGCAGACACATGCGATGTATGTTTCCACTGGCTCCCTTGCTCAACAGTAT GCGCACCCTAATGCTACCCTGCACCCACATACTCCACATCCTCAGCCTTCAGCTACTCCC ACTGGACAGCAGCAGAACCAGCATGGTGGAAGCCATCCTGCACCCAGTCCTGTTCAGCAC CATCAGCACCAGGCTGCCCAGGCTCTCCATCTGGCCAGTCCACAACAGTGCGCACCCTAA TACCATGCAGGGCCCACATACTCCCCACCTTCCATGACACCTGCCTCCAATACGCAGTCG CCACAGAATAGCTTCCCAACAGCACAACAGACTGTCTTCACGATCCATCCTTCTCATGTT CAGCCGGCATACACCAATCCACCCCACATGGCCCATGTACCTCAGGCTCATGTACAGTCA GGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGATGCTAATGACGACACAGCCA CCCGGCGGTCCCCAGGCCGCCCTCGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACA ACAGCGCATTTCCCTTATATGACGCACCCTTCAGTACAAGCCCACCACCAACAGCAGTTG TAAGGCTGCCCTGGAGGAACCGAAAGGCCAAATTCCCTCCTCCCTTCTACTGCTTCTACC AACTGGAAGCACAGAAAACTAGAATTTCATTTATTTTCTTTTTAAAAAATTATATGTTGA TTTCTTGTAACATCCAATAGGAATGCTAACAGTTCACTTGCAGTGGAAGATATTTGGACC GAGTAGAGGTATTTAGGAACTTGTGGGCTGTTCCATAATTCCATACGCTGTTTCTGAGTC CCGCAAGTACCCCAGCTCTGCTTGCTGAAACTGGAAGTTATTTATTTTTAATGACCCGTG AAAGTCATGAACACATCAGCTAGCAAAAGAAGTAACAAGAGTGATTCTTGCTGCTATTAC CGCTTTAAAAAAAAAAAAAAATCAAGACTTGGAACGCCCTTTTACTAAACTTGACAAAGG TTCAGTAAATTCTTACCGTCAAACTGACGGATTATTATTTATAAATCAAGTTTGATGAAG TGATCACTGTCTACAGTGGTTCAAACTTTTAAGTTAAAGGAAAACTTTTACTTTGTAGAT AATATAAAATAAAAACTTTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAACGCGAAGGAGTTCAACCCTCGTTCCTTTTCTCAGCCAAAGCCTTCTACCACCCCA ACCTCACCTCGTCCTCAAGCACAACCTAGCCCATCTATGGTGGGTCATCAGCAGCCAACT CCAGTTTATACTCAACCTGTTTGTTTTGCACCAAATATGATGTATCCAGTCCCAGTGAGC CCAGGTGTGCAACCTTTATATCCTATACCTATGACGCCCATGCCAGTGAATCAAGCCAAG ACATATAGAGCAGTACCAAATATACCCCAACAACGGCAAGACCAGCATCATCAGAGCACC ATGATGCATCCAGCCTCAGCAGCAGGTCCACCAATTGTTGCCACCCCACCAGCTTATTCC ACACAATATGTTGCCTATAGTCCTCAGCAGTTTCCAAATCAACCTCTTGTTCAGCATGTG CCACATTATCAGTCTCAGCATCCTCATGTCTATAGTCCTGTAATACAGGGTAATGCTAGA ATGATGGCACCACCAACACATGCCCAGCCTGGTTTAGTATCTTCTTCAGCAACTCAGTAC GGGGCTCATGAGCAGACACATGCGATGTATGTTTCCACTGGCTCCCTTGCTCAACAGTAT GCGCACCCTAATGCTACCCTGCACCCACATACTCCACATCCTCAGCCTTCAGCTACTCCC ACTGGACAGCAGCAGAACCAGCATGGTGGAAGCCATCCTGCACCCAGTCCTGTTCAGCAC CATCAGCACCAGGCTGCCCAGGCTCTCCATCTGGCCAGTCCACAACAGTGCGCACCCTAA TACCATGCAGGGCCCACATACTCCCCACCTTCCATGACACCTGCCTCCAATACGCAGTCG CCACAGAATAGCTTCCCAACAGCACAACAGACTGTCTTCACGATCCATCCTTCTCATGTT CAGCCGGCATACACCAATCCACCCCACATGGCCCATGTACCTCAGGCTCATGTACAGTCA GGAATGGTTCCTTCTCATCCAACTGCCCATGCGCCAATGATGCTAATGACGACACAGCCA CCCGGCGGTCCCCAGGCCGCCCTCGCTCAAAGTGCACTACAGCCCATTCCAGTCTCGACA ACAGCGCATTTCCCTTATATGACGCACCCTTCAGTACAAGCCCACCACCAACAGCAGTTG TAAGGCTGCCCTGGAGGAACCGAAAGGCCAAATTCCCTCCTCCCTTCTACTGCTTCTACC AACTGGAAGCACAGAAAACTAGAATTTCATTTATTTTCTTTTTAAAAAATTATATGTTGA TTTCTTGTAACATCCAATAGGAATGCTAACAGTTCACTTGCAGTGGAAGATATTTGGACC GAGTAGAGGTATTTAGGAACTTGTGGGCTGTTCCATAATTCCATACGCTGTTTCTGAGTC CCGCAAGTACCCCAGCTCTGCTTGCTGAAACTGGAAGTTATTTATTTTTAATGACCCGTG AAAGTCATGAACACATCAGCTAGCAAAAGAAGTAACAAGAGTGATTCTTGCTGCTATTAC CGCTTTAAAAAAAAAAAAAAATCAAGACTTGGAACGCCCTTTTACTAAACTTGACAAAGG TTCAGTAAATTCTTACCGTCAAACTGACGGATTATTATTTATAAATCAAGTTTGATGAAG TGATCACTGTCTACAGTGGTTCAAACTTTTAAGTTAAAGGAAAACTTTTACTTTGTAGAT AATATAAAATAAAAACTTTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1112-1270, - strand, RNAz p=0.975278 | |
| 1506-1661, + strand, RNAz p=0.995906 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1112-1270, - strand, RNAz p=0.975278 | |
| 1506-1661, + strand, RNAz p=0.995906 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK128613, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 31-192, gnl|bosTau2|chr17 (29361581-29361741) | |
| 31-192, gnl|canFam2|chr26 (12119836-12120010) | |
| 31-192, gnl|dasNov1|scaffold_90597 (4013-3834) | |
| 31-192, gnl|echTel1|scaffold_109466 (361-182) | |
| 31-192, gnl|fr1|chrUn (46387696-46387528) | |
| 31-192, gnl|galGal2|chr15 (6092416-6092600) | |
| 31-192, gnl|hg17|chr12 (110386231-110386410) | |
| 31-192, gnl|Hg17|chr12 (110386397-110386237) | |
| 31-192, gnl|loxAfr1|scaffold_1933 (90058-89876) | |
| 31-192, gnl|mm7|chr5 (121031645-121031449) | |
| 31-192, gnl|Mm7|chr5 (121031466-121031637) | |
| 31-192, gnl|monDom2|scaffold_203 (569657-569478) | |
| 31-192, gnl|oryCun1|scaffold_170677 (4515-4694) | |
| 31-192, gnl|panTro1|chr10 (112992228-112992407) | |
| 31-192, gnl|rheMac2|chr11 (112432166-112432345) | |
| 31-192, gnl|rn3|chr12 (35841610-35841788) | |
| 31-192, gnl|tetNig1|chrUn_random (79531358-79531197) | |
| 31-192, gnl|xenTro1|scaffold_501 (49057-49239) | |
| 250-438, gnl|bosTau2|chr17 (29374998-29375186) | |
| 250-438, gnl|canFam2|chr26 (12105726-12105925) | |
| 250-438, gnl|danRer3|chr5 (49350423-49350221) | |
| 250-438, gnl|fr1|chrUn (46388952-46388742) | |
| 250-438, gnl|galGal2|chr15 (6089132-6089333) | |
| 250-438, gnl|hg17|chr12 (110371078-110371281) | |
| 250-438, gnl|Hg17|chr12 (110371270-110371082) | |
| 250-438, gnl|mm7|chr5 (121036533-121036329) | |
| 250-438, gnl|Mm7|chr5 (121036339-121036527) | |
| 250-438, gnl|monDom2|scaffold_203 (574201-574001) | |
| 250-438, gnl|oryCun1|scaffold_206816 (71256-71055) | |
| 250-438, gnl|panTro1|chr10 (112976875-112977078) | |
| 250-438, gnl|rheMac2|chr11 (112411838-112412041) | |
| 250-438, gnl|rn3|chr12 (35835628-35835833) | |
| 250-438, gnl|tetNig1|chrUn_random (123355239-123355030) | |
| 250-438, gnl|xenTro1|scaffold_501 (46503-46705) | |
| 710-946, gnl|bosTau2|chr17 (29384500-29384736) | |
| 710-946, gnl|canFam2|chr26 (12095299-12095551) | |
| 710-946, gnl|danRer3|chr5 (49355164-49354940) | |
| 710-946, gnl|dasNov1|scaffold_10484 (14092-14344) | |
| 710-946, gnl|echTel1|scaffold_282889 (46465-46217) | |
| 710-946, gnl|fr1|chrUn (46390006-46389787) | |
| 710-946, gnl|galGal2|chr15 (6077859-6078111) | |
| 710-946, gnl|hg17|chr12 (110356546-110356799) | |
| 710-946, gnl|Hg17|chr12 (110356788-110356552) | |
| 710-946, gnl|loxAfr1|scaffold_15988 (9248-8996) | |
| 710-946, gnl|mm7|chr5 (121045882-121045630) | |
| 710-946, gnl|Mm7|chr5 (121045639-121045875) | |
| 710-946, gnl|monDom2|scaffold_203 (588290-588038) | |
| 710-946, gnl|oryCun1|scaffold_206816 (82414-82162) | |
| 710-946, gnl|panTro1|chr10 (112962424-112962676) | |
| 710-946, gnl|rheMac2|chr11 (112396884-112397136) | |
| 710-946, gnl|rn3|chr12 (35825705-35825954) | |
| 710-946, gnl|xenTro1|scaffold_501 (43683-43931) | |
| 1112-1714, gnl|bosTau2|chr17 (29387959-29388560) | |
| 1112-1714, gnl|Hg17|chr12 (110353367-110352760) | |
| 1112-1714, gnl|Mm7|chr5 (121048597-121049190) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-192, gnl|bosTau2|chr17 (29361581-29361741) | |
| 31-192, gnl|canFam2|chr26 (12119836-12120010) | |
| 31-192, gnl|dasNov1|scaffold_90597 (4013-3834) | |
| 31-192, gnl|echTel1|scaffold_109466 (361-182) | |
| 31-192, gnl|fr1|chrUn (46387696-46387528) | |
| 31-192, gnl|galGal2|chr15 (6092416-6092600) | |
| 31-192, gnl|hg17|chr12 (110386231-110386410) | |
| 31-192, gnl|Hg17|chr12 (110386397-110386237) | |
| 31-192, gnl|loxAfr1|scaffold_1933 (90058-89876) | |
| 31-192, gnl|mm7|chr5 (121031645-121031449) | |
| 31-192, gnl|Mm7|chr5 (121031466-121031637) | |
| 31-192, gnl|monDom2|scaffold_203 (569657-569478) | |
| 31-192, gnl|oryCun1|scaffold_170677 (4515-4694) | |
| 31-192, gnl|panTro1|chr10 (112992228-112992407) | |
| 31-192, gnl|rheMac2|chr11 (112432166-112432345) | |
| 31-192, gnl|rn3|chr12 (35841610-35841788) | |
| 31-192, gnl|tetNig1|chrUn_random (79531358-79531197) | |
| 31-192, gnl|xenTro1|scaffold_501 (49057-49239) | |
| 250-438, gnl|bosTau2|chr17 (29374998-29375186) | |
| 250-438, gnl|canFam2|chr26 (12105726-12105925) | |
| 250-438, gnl|danRer3|chr5 (49350423-49350221) | |
| 250-438, gnl|fr1|chrUn (46388952-46388742) | |
| 250-438, gnl|galGal2|chr15 (6089132-6089333) | |
| 250-438, gnl|hg17|chr12 (110371078-110371281) | |
| 250-438, gnl|Hg17|chr12 (110371270-110371082) | |
| 250-438, gnl|mm7|chr5 (121036533-121036329) | |
| 250-438, gnl|Mm7|chr5 (121036339-121036527) | |
| 250-438, gnl|monDom2|scaffold_203 (574201-574001) | |
| 250-438, gnl|oryCun1|scaffold_206816 (71256-71055) | |
| 250-438, gnl|panTro1|chr10 (112976875-112977078) | |
| 250-438, gnl|rheMac2|chr11 (112411838-112412041) | |
| 250-438, gnl|rn3|chr12 (35835628-35835833) | |
| 250-438, gnl|tetNig1|chrUn_random (123355239-123355030) | |
| 250-438, gnl|xenTro1|scaffold_501 (46503-46705) | |
| 710-946, gnl|bosTau2|chr17 (29384500-29384736) | |
| 710-946, gnl|canFam2|chr26 (12095299-12095551) | |
| 710-946, gnl|danRer3|chr5 (49355164-49354940) | |
| 710-946, gnl|dasNov1|scaffold_10484 (14092-14344) | |
| 710-946, gnl|echTel1|scaffold_282889 (46465-46217) | |
| 710-946, gnl|fr1|chrUn (46390006-46389787) | |
| 710-946, gnl|galGal2|chr15 (6077859-6078111) | |
| 710-946, gnl|hg17|chr12 (110356546-110356799) | |
| 710-946, gnl|Hg17|chr12 (110356788-110356552) | |
| 710-946, gnl|loxAfr1|scaffold_15988 (9248-8996) | |
| 710-946, gnl|mm7|chr5 (121045882-121045630) | |
| 710-946, gnl|Mm7|chr5 (121045639-121045875) | |
| 710-946, gnl|monDom2|scaffold_203 (588290-588038) | |
| 710-946, gnl|oryCun1|scaffold_206816 (82414-82162) | |
| 710-946, gnl|panTro1|chr10 (112962424-112962676) | |
| 710-946, gnl|rheMac2|chr11 (112396884-112397136) | |
| 710-946, gnl|rn3|chr12 (35825705-35825954) | |
| 710-946, gnl|xenTro1|scaffold_501 (43683-43931) | |
| 1112-1714, gnl|bosTau2|chr17 (29387959-29388560) | |
| 1112-1714, gnl|Hg17|chr12 (110353367-110352760) | |
| 1112-1714, gnl|Mm7|chr5 (121048597-121049190) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| cmu (0.55918) | |
| amn (0.417711) | |
| fat (0.294855) | |
| fce (0.271592) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| mas (0.210305) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.55918) | |
| amn (0.417711) | |
| fat (0.294855) | |
| fce (0.271592) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| mas (0.210305) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |