Ss1.1-rfat0107_c23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGTTTGACCATCCATTATGAGAATGGATTTTCTGTTACCACTGAACCACAGGAGGGTG CCTTTCCCAAGACAATCATACAGGCTCCTTATGAAAAGCTGAAAATGTCTTCAGATGATG GAATCAGGATGCTGTATTTAGATTTTGGAGGCAAAGATGGAGAGCTTCAACTGGACCTTC ATTCCTGCCCCAAGCCAATCGTTTTCATCATCCATTCCTTCCTGTCAGCTAAGATTACAA GACTGGGTTTGGTGGCCTGAAAAGAGGGGCGAACTGCCTATGAGAAAAGGAGGCTGGGAC GCCACCAAAAAGGGTCATATTGGACACCATTTGCAGTGATGCACCCGATGTAGCATGCCA CAGTCAGCTTTAGCCCCCAAGAGTCCTGTTTAACGGTCCCAGACTCCTCTGTCAATTTCA GGAACTATAAGCAGTACCCTCAGAAAATACCACCAGGATGATCAGACTTTTAGTACAGTA AAAGGGTAAAGAGGTGAGGCTGGCCGAAAATACACAGCATAGCTTTTAAATAATGACAGT CAAGGACATGAACATTAGAACAGCATGTGCAGATCTTAATCAAACCAGTTTCTAGCTAAC TGGTTCACCCAGGTAAGCAAGGGCTGAATAAATGAGAAATGGACCTTTTTCACCTCTCTC CCCCACCAGTAACCAGGATTCCTTGTTCTACTGTGATTTACTTCCCACTTCGAATTGAGT TGACTTTCGCTGGTAAGGAAAGTCTTCAAATGGAGACCCACTTTTATTTAAGAATGAAAC AGCTGTTACTTTTTCCGTATGAATTATCTTTCAGTGATGTAGTATGATTCTGAAGTGTTC TCATTAGCATATGATGATTGAGAATTAAATAAAGCATCAGATACCCATCTGAGCTGTAAG CTTGTGGATTCTGAGCCAAAGCAGACTGCTTAAACTGCAAAGCTTTGCTGAAGAGTGGTG TGTTACATTCATACCAAGGTCTGCTGTCTTAGAGCCACGACTTACAGCTTTATTTGTAGA AAGCAAATTATGGGTATTTTTAAAAAGTTGTCATATATATAATAATAATTCATTTGGGGT TAAGTAATTATCCTCATTTTGTGGTTTTCAGTGGAAGTACTGAGCAATTTATTGGCCCTT GTTACTACCTGTGCTTATTTGCATGAATTTTCAAGCAAGTAATAGTGCAGCCTTACGTGA CTCTGGTTAATGCTGGGATTTACATATAGAGCCAGTGTTATAATCAAATCCATTGATAGT ATCTTCAGCTCTTTTGGAATTCCAGGGAAATAATATAAGGACCTGATATTTTTCTACAAG AATATTTTCAAACATTCAAATGGCATATATTACTTTTGCTTTTCTTTCAACACAAATTCA CTGAAAACACACCTATTATTTGATTTTAAAGTCACTTTCTTTAAACCTTGAAAATTAGCT GTAGAATTTCTGTGTCTGTAACCCTGGTAGTTTATATAGACAAATGTTCCAGGTTAGACT GATGTGTTTTTTCAGAACCATATTTTAGCAAATACCTATGCAAAGAGCTTTAAAAAATTA ATCTGTTTTAAAAGAATGATTTTGTTCACTCAACTATCTGTGTTTGTTGAGTTTTACTTT AGATCAGCATTGTATTTTTGATCAGTGTTTCCCCAAAGTAGGTATCATGTAATACAAGTT CCAAGGGGCATTGACTGAGTGGTGTTTTGTGTGGGAAATGAGGTGTTTGGTAATCAAAAC ATGTTTGTTAAATACTGAGTTAAAAAATATCAAACAGATTTCACGGTTGCAGTCCTCCTC AAAGACTTATCGCACTTTGCCGTTTTGTAAGGGGGTCCTGTGCGCCATTCCTTTAGCTTA CCTACAGACCTCCTCTCTAAAGGAGCAATTTGTGAAGCTAGTGTTTAAAGAAACGCACAC AAACACACAAAACAAACAAAAAAGCCACTTTGGAAAACACAACCTTAGGACATTGATTTT GTTTTGTTTCCTATTTAAAAATGCTGAAGTGAAGTCTCAGCCTGAGCATTGCAGGAAAGC TTTGATGCATATGTAAATTATACCGCCTTCTTTCATTATATATTTTCAGAAATCACTGGA ATGTTGTTATACAAGAGAATTATACTTGTGTATTGTAAATAACATATTAAGAAACATATA TTAATGCCAATAGTTTAATTCAACAATATGTAATCTAAGGTGCTCAGTACTATATGAAGT GTGAGTTAATTACTCATAATTAAGTTGCAAAGATCCAATTATATATTTATAGACAAATTA AAATGATCATAATTACAAATATTTCTTCATCACTTGAGTTTTGGACTGATTAATATCTGG GTGAGGGGGAAACAATCTACATTCTCTGCGTTGATAAGCATTTAATTTAAATATTTATAT TTTAGAAAATATATTTGAATAAAATTTAATGCATTTTCTGAATGGACATGTGTGATTAGC AAGAAATAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGTTTGACCATCCATTATGAGAATGGATTTTCTGTTACCACTGAACCACAGGAGGGTG CCTTTCCCAAGACAATCATACAGGCTCCTTATGAAAAGCTGAAAATGTCTTCAGATGATG GAATCAGGATGCTGTATTTAGATTTTGGAGGCAAAGATGGAGAGCTTCAACTGGACCTTC ATTCCTGCCCCAAGCCAATCGTTTTCATCATCCATTCCTTCCTGTCAGCTAAGATTACAA GACTGGGTTTGGTGGCCTGAAAAGAGGGGCGAACTGCCTATGAGAAAAGGAGGCTGGGAC GCCACCAAAAAGGGTCATATTGGACACCATTTGCAGTGATGCACCCGATGTAGCATGCCA CAGTCAGCTTTAGCCCCCAAGAGTCCTGTTTAACGGTCCCAGACTCCTCTGTCAATTTCA GGAACTATAAGCAGTACCCTCAGAAAATACCACCAGGATGATCAGACTTTTAGTACAGTA AAAGGGTAAAGAGGTGAGGCTGGCCGAAAATACACAGCATAGCTTTTAAATAATGACAGT CAAGGACATGAACATTAGAACAGCATGTGCAGATCTTAATCAAACCAGTTTCTAGCTAAC TGGTTCACCCAGGTAAGCAAGGGCTGAATAAATGAGAAATGGACCTTTTTCACCTCTCTC CCCCACCAGTAACCAGGATTCCTTGTTCTACTGTGATTTACTTCCCACTTCGAATTGAGT TGACTTTCGCTGGTAAGGAAAGTCTTCAAATGGAGACCCACTTTTATTTAAGAATGAAAC AGCTGTTACTTTTTCCGTATGAATTATCTTTCAGTGATGTAGTATGATTCTGAAGTGTTC TCATTAGCATATGATGATTGAGAATTAAATAAAGCATCAGATACCCATCTGAGCTGTAAG CTTGTGGATTCTGAGCCAAAGCAGACTGCTTAAACTGCAAAGCTTTGCTGAAGAGTGGTG TGTTACATTCATACCAAGGTCTGCTGTCTTAGAGCCACGACTTACAGCTTTATTTGTAGA AAGCAAATTATGGGTATTTTTAAAAAGTTGTCATATATATAATAATAATTCATTTGGGGT TAAGTAATTATCCTCATTTTGTGGTTTTCAGTGGAAGTACTGAGCAATTTATTGGCCCTT GTTACTACCTGTGCTTATTTGCATGAATTTTCAAGCAAGTAATAGTGCAGCCTTACGTGA CTCTGGTTAATGCTGGGATTTACATATAGAGCCAGTGTTATAATCAAATCCATTGATAGT ATCTTCAGCTCTTTTGGAATTCCAGGGAAATAATATAAGGACCTGATATTTTTCTACAAG AATATTTTCAAACATTCAAATGGCATATATTACTTTTGCTTTTCTTTCAACACAAATTCA CTGAAAACACACCTATTATTTGATTTTAAAGTCACTTTCTTTAAACCTTGAAAATTAGCT GTAGAATTTCTGTGTCTGTAACCCTGGTAGTTTATATAGACAAATGTTCCAGGTTAGACT GATGTGTTTTTTCAGAACCATATTTTAGCAAATACCTATGCAAAGAGCTTTAAAAAATTA ATCTGTTTTAAAAGAATGATTTTGTTCACTCAACTATCTGTGTTTGTTGAGTTTTACTTT AGATCAGCATTGTATTTTTGATCAGTGTTTCCCCAAAGTAGGTATCATGTAATACAAGTT CCAAGGGGCATTGACTGAGTGGTGTTTTGTGTGGGAAATGAGGTGTTTGGTAATCAAAAC ATGTTTGTTAAATACTGAGTTAAAAAATATCAAACAGATTTCACGGTTGCAGTCCTCCTC AAAGACTTATCGCACTTTGCCGTTTTGTAAGGGGGTCCTGTGCGCCATTCCTTTAGCTTA CCTACAGACCTCCTCTCTAAAGGAGCAATTTGTGAAGCTAGTGTTTAAAGAAACGCACAC AAACACACAAAACAAACAAAAAAGCCACTTTGGAAAACACAACCTTAGGACATTGATTTT GTTTTGTTTCCTATTTAAAAATGCTGAAGTGAAGTCTCAGCCTGAGCATTGCAGGAAAGC TTTGATGCATATGTAAATTATACCGCCTTCTTTCATTATATATTTTCAGAAATCACTGGA ATGTTGTTATACAAGAGAATTATACTTGTGTATTGTAAATAACATATTAAGAAACATATA TTAATGCCAATAGTTTAATTCAACAATATGTAATCTAAGGTGCTCAGTACTATATGAAGT GTGAGTTAATTACTCATAATTAAGTTGCAAAGATCCAATTATATATTTATAGACAAATTA AAATGATCATAATTACAAATATTTCTTCATCACTTGAGTTTTGGACTGATTAATATCTGG GTGAGGGGGAAACAATCTACATTCTCTGCGTTGATAAGCATTTAATTTAAATATTTATAT TTTAGAAAATATATTTGAATAAAATTTAATGCATTTTCTGAATGGACATGTGTGATTAGC AAGAAATAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-167, gnl|bosTau2|chr14 (50680716-50680882) | |
| 1-167, gnl|canFam2|chr13 (22436013-22436190) | |
| 1-167, gnl|danRer3|chr15 (23807757-23807580) | |
| 1-167, gnl|dasNov1|scaffold_276067 (136-313) | |
| 1-167, gnl|echTel1|scaffold_295345 (53041-53218) | |
| 1-167, gnl|fr1|chrUn (91613006-91612787) | |
| 1-167, gnl|galGal2|chr2 (146823443-146823265) | |
| 1-167, gnl|hg17|chr8 (121623224-121623401) | |
| 1-167, gnl|Hg17|chr8 (121623397-121623231) | |
| 1-167, gnl|loxAfr1|scaffold_4788 (62042-62219) | |
| 1-167, gnl|mm7|chr15 (55705887-55706064) | |
| 1-167, gnl|Mm7|chr15 (55706060-55705894) | |
| 1-167, gnl|monDom2|scaffold_3 (35102518-35102341) | |
| 1-167, gnl|oryCun1|scaffold_202479 (13457-13280) | |
| 1-167, gnl|panTro1|chr7 (124272546-124272723) | |
| 1-167, gnl|rheMac2|chr8 (123063842-123064019) | |
| 1-167, gnl|rn3|chr7 (92194511-92194688) | |
| 1-167, gnl|tetNig1|chr8 (5189003-5188784) | |
| 1-167, gnl|xenTro1|scaffold_330 (462066-461889) | |
| 168-962, gnl|bosTau2|chr14 (50683901-50684674) | |
| 168-962, gnl|Hg17|chr8 (121620390-121619568) | |
| 168-962, gnl|Mm7|chr15 (55702666-55701877) | |
| 964-1330, gnl|bosTau2|chr14 (50684698-50685064) | |
| 964-1330, gnl|canFam2|chr13 (22431283-22431880) | |
| 964-1330, gnl|dasNov1|scaffold_157387 (1667-1041) | |
| 964-1330, gnl|echTel1|scaffold_295345 (44511-45097) | |
| 964-1330, gnl|hg17|chr8 (121619174-121619766) | |
| 964-1330, gnl|Hg17|chr8 (121619542-121619173) | |
| 964-1330, gnl|loxAfr1|scaffold_4788 (51712-52345) | |
| 964-1330, gnl|mm7|chr15 (55701430-55702091) | |
| 964-1330, gnl|Mm7|chr15 (55701851-55701428) | |
| 964-1330, gnl|monDom2|scaffold_3 (35108747-35108151) | |
| 964-1330, gnl|oryCun1|scaffold_202479 (18553-17908) | |
| 964-1330, gnl|panTro1|chr7 (124268491-124269093) | |
| 964-1330, gnl|rheMac2|chr8 (123059143-123059730) | |
| 964-1330, gnl|rn3|chr7 (92190314-92190945) | |
| 1332-1516, gnl|bosTau2|chr14 (50685255-50685448) | |
| 1332-1516, gnl|Hg17|chr8 (121619158-121618954) | |
| 1332-1516, gnl|Mm7|chr15 (55701411-55701209) | |
| 1567-2472, gnl|bosTau2|chr14 (50685465-50686366) | |
| 1567-2472, gnl|Hg17|chr8 (121618937-121618025) | |
| 1567-2472, gnl|Mm7|chr15 (55701187-55700317) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-167, gnl|bosTau2|chr14 (50680716-50680882) | |
| 1-167, gnl|canFam2|chr13 (22436013-22436190) | |
| 1-167, gnl|danRer3|chr15 (23807757-23807580) | |
| 1-167, gnl|dasNov1|scaffold_276067 (136-313) | |
| 1-167, gnl|echTel1|scaffold_295345 (53041-53218) | |
| 1-167, gnl|fr1|chrUn (91613006-91612787) | |
| 1-167, gnl|galGal2|chr2 (146823443-146823265) | |
| 1-167, gnl|hg17|chr8 (121623224-121623401) | |
| 1-167, gnl|Hg17|chr8 (121623397-121623231) | |
| 1-167, gnl|loxAfr1|scaffold_4788 (62042-62219) | |
| 1-167, gnl|mm7|chr15 (55705887-55706064) | |
| 1-167, gnl|Mm7|chr15 (55706060-55705894) | |
| 1-167, gnl|monDom2|scaffold_3 (35102518-35102341) | |
| 1-167, gnl|oryCun1|scaffold_202479 (13457-13280) | |
| 1-167, gnl|panTro1|chr7 (124272546-124272723) | |
| 1-167, gnl|rheMac2|chr8 (123063842-123064019) | |
| 1-167, gnl|rn3|chr7 (92194511-92194688) | |
| 1-167, gnl|tetNig1|chr8 (5189003-5188784) | |
| 1-167, gnl|xenTro1|scaffold_330 (462066-461889) | |
| 168-962, gnl|bosTau2|chr14 (50683901-50684674) | |
| 168-962, gnl|Hg17|chr8 (121620390-121619568) | |
| 168-962, gnl|Mm7|chr15 (55702666-55701877) | |
| 964-1330, gnl|bosTau2|chr14 (50684698-50685064) | |
| 964-1330, gnl|canFam2|chr13 (22431283-22431880) | |
| 964-1330, gnl|dasNov1|scaffold_157387 (1667-1041) | |
| 964-1330, gnl|echTel1|scaffold_295345 (44511-45097) | |
| 964-1330, gnl|hg17|chr8 (121619174-121619766) | |
| 964-1330, gnl|Hg17|chr8 (121619542-121619173) | |
| 964-1330, gnl|loxAfr1|scaffold_4788 (51712-52345) | |
| 964-1330, gnl|mm7|chr15 (55701430-55702091) | |
| 964-1330, gnl|Mm7|chr15 (55701851-55701428) | |
| 964-1330, gnl|monDom2|scaffold_3 (35108747-35108151) | |
| 964-1330, gnl|oryCun1|scaffold_202479 (18553-17908) | |
| 964-1330, gnl|panTro1|chr7 (124268491-124269093) | |
| 964-1330, gnl|rheMac2|chr8 (123059143-123059730) | |
| 964-1330, gnl|rn3|chr7 (92190314-92190945) | |
| 1332-1516, gnl|bosTau2|chr14 (50685255-50685448) | |
| 1332-1516, gnl|Hg17|chr8 (121619158-121618954) | |
| 1332-1516, gnl|Mm7|chr15 (55701411-55701209) | |
| 1567-2472, gnl|bosTau2|chr14 (50685465-50686366) | |
| 1567-2472, gnl|Hg17|chr8 (121618937-121618025) | |
| 1567-2472, gnl|Mm7|chr15 (55701187-55700317) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| bfe (1.64843) | |
| tbr (0.616713) | |
| sme (0.610874) | |
| ret (0.514933) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| mas (0.210305) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| spc (0.113366) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (1.64843) | |
| tbr (0.616713) | |
| sme (0.610874) | |
| ret (0.514933) | |
| tra (0.369276) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| mas (0.210305) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| spc (0.113366) |