Non-Coding RNA Search

Ss1.1-rfat0107_e17.5

Sequence:


               
               CAGAAAACAAACAAAAAAAAAATGACAAAAAAAGTGCAAGTGATTTTTCTACCAGACAGC
GAAGCACCCCTTTGCTTCCCATGCAACTTCAAGAAGGTTTCCTATACTATACATATATAT
ACGTTCTGGTCGGCAAGCCCTGCTGATCAGAGAAAGTCTCTGCATGTTCTAGTGTTAGTA
ACTAATTTTTATATAGTTAATGTAGGATAAAGTAGAGTGCATTAAGACACAATATTGTAA
TCCCTACTCTAGGCACTTGCCTTTAAACTATGTTTTTCAGCCCTTCAGAAGGGTTCTACT
ACTGTCCTATACAATCAAGTAACTGAAATTCTTGGGAAGACACTTTGCTCCTCATCTTTC
CCCCCCGAAACAATGTTGTTTTGTTTTGTTTTTTTTCCTTAATTTGCACGAAAACAAAAA
TTCCATATCAATGTGCCTTGCCCTGGATAGCGATTATTTGTGGAATTGTTGCACATGCTC
CTCTATTGAAAGGGGTTTTTCCCTAGTCAAGCATTTGGAGACACTTTTTGTAAATGTGAC
TTTTATGTCAGCCATCGTCAGTTTCAACATCTAGAACTAAATAGAGAGTTAGTTGTTCCG
CAGATAGGAGTAGTCTTTATTGTCCTCTGTGGTCAGTGGCAGTGCTATTCTGAGATCTGT
AGATGCTTAGAATATCAGTATTTTGGATGTTGCTGCATTTTACAATTTATTTGGAGTCTT
CCTTTATTTCCCCCTCCCACCCCCAGATATATGAAAATATGCAATACCTGCTTATATCGT
GTAGAAAAGCTTAGCGATGATTAATTTTTCTTTTATTTTTTTTATTTGACCAAAGTCGGT
GCTGCACTTGACGCAGTGTGTTTTAGGTGTCTGTCTTCGTACCTTTTTTTTGTGATTTTT
GAATGCACGTGCGCAGGAAGGGCTCCTCTTAGAGAAGCAGTCAAACTGTGAAGCACTAAG
CTGACCCTGCTTCAAGCAATTTTGTTTTTACAACTGTTCCTTTCACAAGCAAGCCTTAAA
AAAAAAAAAAAAAAGACAACTTCCCTTTTCTTCAGCTCCCACACCCCATTTTTCTTAGCA
GACTGCAGTCAATCCACATTCAATACAAAGTATATAATGCCCATTTTTATATGCACGTTT
TTAAACTTCCAAGTTCTGAAATTGTTTACTGGTTATCTCTATTTAAGGAAAAAAAAATAA
AATAAAACATTTTGGATTTTCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAAACAAACAAAAAAAAAATGACAAAAAAAGTGCAAGTGATTTTTCTACCAGACAGC
GAAGCACCCCTTTGCTTCCCATGCAACTTCAAGAAGGTTTCCTATACTATACATATATAT
ACGTTCTGGTCGGCAAGCCCTGCTGATCAGAGAAAGTCTCTGCATGTTCTAGTGTTAGTA
ACTAATTTTTATATAGTTAATGTAGGATAAAGTAGAGTGCATTAAGACACAATATTGTAA
TCCCTACTCTAGGCACTTGCCTTTAAACTATGTTTTTCAGCCCTTCAGAAGGGTTCTACT
ACTGTCCTATACAATCAAGTAACTGAAATTCTTGGGAAGACACTTTGCTCCTCATCTTTC
CCCCCCGAAACAATGTTGTTTTGTTTTGTTTTTTTTCCTTAATTTGCACGAAAACAAAAA
TTCCATATCAATGTGCCTTGCCCTGGATAGCGATTATTTGTGGAATTGTTGCACATGCTC
CTCTATTGAAAGGGGTTTTTCCCTAGTCAAGCATTTGGAGACACTTTTTGTAAATGTGAC
TTTTATGTCAGCCATCGTCAGTTTCAACATCTAGAACTAAATAGAGAGTTAGTTGTTCCG
CAGATAGGAGTAGTCTTTATTGTCCTCTGTGGTCAGTGGCAGTGCTATTCTGAGATCTGT
AGATGCTTAGAATATCAGTATTTTGGATGTTGCTGCATTTTACAATTTATTTGGAGTCTT
CCTTTATTTCCCCCTCCCACCCCCAGATATATGAAAATATGCAATACCTGCTTATATCGT
GTAGAAAAGCTTAGCGATGATTAATTTTTCTTTTATTTTTTTTATTTGACCAAAGTCGGT
GCTGCACTTGACGCAGTGTGTTTTAGGTGTCTGTCTTCGTACCTTTTTTTTGTGATTTTT
GAATGCACGTGCGCAGGAAGGGCTCCTCTTAGAGAAGCAGTCAAACTGTGAAGCACTAAG
CTGACCCTGCTTCAAGCAATTTTGTTTTTACAACTGTTCCTTTCACAAGCAAGCCTTAAA
AAAAAAAAAAAAAAGACAACTTCCCTTTTCTTCAGCTCCCACACCCCATTTTTCTTAGCA
GACTGCAGTCAATCCACATTCAATACAAAGTATATAATGCCCATTTTTATATGCACGTTT
TTAAACTTCCAAGTTCTGAAATTGTTTACTGGTTATCTCTATTTAAGGAAAAAAAAATAA
AATAAAACATTTTGGATTTTCATA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-211, - strand, RNAz p=0.996859
               

               
               332-443, - strand, RNAz p=0.886941
               

               
               718-849, - strand, RNAz p=0.948346
               

               
               890-1009, + strand, RNAz p=0.605939

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-211, - strand, RNAz p=0.996859
               

               
               332-443, - strand, RNAz p=0.886941
               

               
               718-849, - strand, RNAz p=0.948346
               

               
               890-1009, + strand, RNAz p=0.605939

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               602-729, + strand, RNAmicro p=0.934418

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               602-729, + strand, RNAmicro p=0.934418

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1224, gnl|bosTau2|chr3 (56997841-56996619)
               

               
               1-1224, gnl|Hg17|chr1 (61634501-61635730)
               

               
               1-1224, gnl|Mm7|chr4 (97505446-97506725)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr3 (56997841-56996619)
               

               
               1-1224, gnl|Hg17|chr1 (61634501-61635730)
               

               
               1-1224, gnl|Mm7|chr4 (97505446-97506725)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               fce (0.543183)
               

               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

	1-211, - strand, RNAz p=0.996859
	332-443, - strand, RNAz p=0.886941
	718-849, - strand, RNAz p=0.948346
	890-1009, + strand, RNAz p=0.605939

	1-1224, gnl\|bosTau2\|chr3 (56997841-56996619)
	1-1224, gnl\|Hg17\|chr1 (61634501-61635730)
	1-1224, gnl\|Mm7\|chr4 (97505446-97506725)

	fce (0.543183)
	pro (0.512033)
	fat (0.442282)
	bla (0.373042)
	sag (0.36543)
	csk (0.281492)
	ssp (0.271039)
	ova (0.258264)
	cbe (0.239234)
	mgp (0.230681)
	jca (0.22792)
	hea (0.204499)
	aor (0.195274)
	gul (0.177588)
	rec (0.17307)
	fhi (0.169578)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)