Non-Coding RNA Search

Ss1.1-rfat0107_i9.5

Sequence:


               
               GTTTATTAGAGTATCTGCAGAGTAACCTTCAAGTTTTTCAAATATTTGTCTCCCTCCTCC
TCCAGTCTCCCCAGACCCTGCTCCAAGCTGTATATAAACTTGTTTTCATGTTGCCCCATG
TTCATAGTATTACAGCCTCGATTCTTTTAATGTGATCCGATTGGCAGTAATTAGTCTGGC
GAACTAAGATGTGGTGAAGTGTAGGTATGGCAGAGGGGAGGAGGAGTCATAGGTGGGCAA
TTTCTGAAGCCTCTGATGAGTGTTGAAAACCACAGAACTTACTAGGAGGGGAAAATTGTG
CCTGGGAATCCTAAAGGGAACATTAGGTTTGGAGTAGATTGGTTCAATATTGATACCATT
CTCAGTATGTGGTTTTTACTCTACTTTTCAGCAAAAGACAGATGATTTGAGGTTGCAGTT
GTGCTGTTTCATATCTCAAAGTAAATGAAGATTAAAAAAAAAAAAAAACTCAACTTTCTT
TTTTGCTAAACTGATACCATTCAGCCAAAGATCTAATAGGAAAGGGGAAGCTTTATCATT
TAGCTGAGACTTTGAATAGGAATCAAATCCATGTATTTTATTCTTAAAACTTAGTCAACT
TAAATGTTATACAGTAAATTCATAAGATTAGCCAGTTTTCAGGTGTTCAACTGAGAAAAC
ATTTTTTATTCATCAGAGTTTGGAGATGTTTTTATTTTATGGAGATGTTTGGTATACTGG
CACTCCTGATTGACAATTTCACGTTTTTGGAAACTTTGTAATTTGTAAACGTGCAATCAG
TGGCTTGCTATGGTTTGCATGATTTAACATGGCAGCCAATGTTGGACCAAGAAAAACATA
CTTGCTTTGAAAATTCAAGAGAGAATGTCAGCGAGAGTATTATATGCATAATGTTTAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTATTAGAGTATCTGCAGAGTAACCTTCAAGTTTTTCAAATATTTGTCTCCCTCCTCC
TCCAGTCTCCCCAGACCCTGCTCCAAGCTGTATATAAACTTGTTTTCATGTTGCCCCATG
TTCATAGTATTACAGCCTCGATTCTTTTAATGTGATCCGATTGGCAGTAATTAGTCTGGC
GAACTAAGATGTGGTGAAGTGTAGGTATGGCAGAGGGGAGGAGGAGTCATAGGTGGGCAA
TTTCTGAAGCCTCTGATGAGTGTTGAAAACCACAGAACTTACTAGGAGGGGAAAATTGTG
CCTGGGAATCCTAAAGGGAACATTAGGTTTGGAGTAGATTGGTTCAATATTGATACCATT
CTCAGTATGTGGTTTTTACTCTACTTTTCAGCAAAAGACAGATGATTTGAGGTTGCAGTT
GTGCTGTTTCATATCTCAAAGTAAATGAAGATTAAAAAAAAAAAAAAACTCAACTTTCTT
TTTTGCTAAACTGATACCATTCAGCCAAAGATCTAATAGGAAAGGGGAAGCTTTATCATT
TAGCTGAGACTTTGAATAGGAATCAAATCCATGTATTTTATTCTTAAAACTTAGTCAACT
TAAATGTTATACAGTAAATTCATAAGATTAGCCAGTTTTCAGGTGTTCAACTGAGAAAAC
ATTTTTTATTCATCAGAGTTTGGAGATGTTTTTATTTTATGGAGATGTTTGGTATACTGG
CACTCCTGATTGACAATTTCACGTTTTTGGAAACTTTGTAATTTGTAAACGTGCAATCAG
TGGCTTGCTATGGTTTGCATGATTTAACATGGCAGCCAATGTTGGACCAAGAAAAACATA
CTTGCTTTGAAAATTCAAGAGAGAATGTCAGCGAGAGTATTATATGCATAATGTTTAGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               691-888, + strand, RNAz p=0.679832

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               691-888, + strand, RNAz p=0.679832

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               3-202, gnl|bosTau2|chr8 (24537573-24537394)
               

               
               3-202, gnl|Hg17|chr9 (76348858-76349081)
               

               
               3-202, gnl|Mm7|chr19 (17029300-17029055)
               


               
               300-890, gnl|bosTau2|chr8 (24537112-24536536)
               

               
               300-890, gnl|Hg17|chr9 (76349352-76349893)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-202, gnl|bosTau2|chr8 (24537573-24537394)
               

               
               3-202, gnl|Hg17|chr9 (76348858-76349081)
               

               
               3-202, gnl|Mm7|chr19 (17029300-17029055)
               


               
               300-890, gnl|bosTau2|chr8 (24537112-24536536)
               

               
               300-890, gnl|Hg17|chr9 (76349352-76349893)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fat (0.147427)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               kid (0.129735)

	3-202, gnl\|bosTau2\|chr8 (24537573-24537394)
	3-202, gnl\|Hg17\|chr9 (76348858-76349081)
	3-202, gnl\|Mm7\|chr19 (17029300-17029055)

	300-890, gnl\|bosTau2\|chr8 (24537112-24536536)
	300-890, gnl\|Hg17\|chr9 (76349352-76349893)