Non-Coding RNA Search

Ss1.1-rfat0107_j13.5

Sequence:


               
               GGAGCCCTCATTTCTCCCCATAACGTCCCTCCCCACCAACCCTGTCTGGGGAATTTGACT
TTCTGCTTAATGATCCTGGAATGAGTCAGGCCTTCTCTTAGAATTCCCTTCGAGTCTTTG
TTTCAGCACGAAACTTCCCCACTCCTATCTCATTTCATCATTTTACTGCCTTTTTTTGCC
CTTCTTTCGGTTATGCACTCATCGTCTGCTGATAGGTGCTGTACAGGGTGTAAGTGAAAT
GGCAATGTTTTAAACCTTTTGAAGTGGTCTTTAAGAAAAAGGCATGTCTTTCTGGGTTTT
GTTTGTATTGAATGGGTCTGCAAAGACTGATACATCCTTGTTAAGCTGATCATGAGGCAA
GTCTCATTCCAGCTACGGTACTGCCAAGAAGTTCACTTTATGACTGAATTTCACCTGTGT
TGCTCTCTTTTAAAGCAATGACTTATTTCAAGATGCATGTTTTTGTATCATATTGGAAAG
TATGTTTTATTTTCCTTAAAGTTGTAATATTATGTTTGAAATTGTATATATTTTAAATGA
TGTAGCTTTGACAGGTTTTATTTGGTTGATATGATTTTCTATTAAAAGAGAATGCTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCCTCATTTCTCCCCATAACGTCCCTCCCCACCAACCCTGTCTGGGGAATTTGACT
TTCTGCTTAATGATCCTGGAATGAGTCAGGCCTTCTCTTAGAATTCCCTTCGAGTCTTTG
TTTCAGCACGAAACTTCCCCACTCCTATCTCATTTCATCATTTTACTGCCTTTTTTTGCC
CTTCTTTCGGTTATGCACTCATCGTCTGCTGATAGGTGCTGTACAGGGTGTAAGTGAAAT
GGCAATGTTTTAAACCTTTTGAAGTGGTCTTTAAGAAAAAGGCATGTCTTTCTGGGTTTT
GTTTGTATTGAATGGGTCTGCAAAGACTGATACATCCTTGTTAAGCTGATCATGAGGCAA
GTCTCATTCCAGCTACGGTACTGCCAAGAAGTTCACTTTATGACTGAATTTCACCTGTGT
TGCTCTCTTTTAAAGCAATGACTTATTTCAAGATGCATGTTTTTGTATCATATTGGAAAG
TATGTTTTATTTTCCTTAAAGTTGTAATATTATGTTTGAAATTGTATATATTTTAAATGA
TGTAGCTTTGACAGGTTTTATTTGGTTGATATGATTTTCTATTAAAAGAGAATGCTGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               92-600, gnl|bosTau2|chr29 (22076491-22076991)
               

               
               92-600, gnl|Hg17|chr11 (125333050-125332561)
               

               
               92-600, gnl|Mm7|chr9 (35401992-35402445)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-600, gnl|bosTau2|chr29 (22076491-22076991)
               

               
               92-600, gnl|Hg17|chr11 (125333050-125332561)
               

               
               92-600, gnl|Mm7|chr9 (35401992-35402445)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               ldo (0.0970026)

	92-600, gnl\|bosTau2\|chr29 (22076491-22076991)
	92-600, gnl\|Hg17\|chr11 (125333050-125332561)
	92-600, gnl\|Mm7\|chr9 (35401992-35402445)

	gul (0.177588)
	fhi (0.169578)
	fat (0.147427)
	nmm (0.132802)
	ldo (0.0970026)