Non-Coding RNA Search

Ss1.1-rfat0107_n3.5

Sequence:


               
               GTATCTGTCACAATACTGGGTTCATGGCTTTACATACTAAAATTGCTCAATAGAACAGTT
GCCATGGAACAGTCAATTCAATGAGGAAAATTACCATAAAGTAGTCGATTAATTCACCCT
TCTTAGATGTAGACAAATTGTTCTGAATAGATATTTATCTCTAACTCTTGAATTTGATAT
GTTAATAAATATTTTATTAAATGTTAGTAAGTATTAATAGTCTAATGAAATGTTTTCTGT
TTTATACCATATATTTCTATATCTAAAGGATCTCTAGAAATACCAAATTATATTGTGGAA
TATAAAAGCCTTAACTAAGTAATTGTTTCACTATCCTTTGAGTGGCAGATGTCACAGACT
TTATATTTAAAATGATGTTCTATATTATTTTTCCTTACAAACCTTTTGAAAAATAATTTA
ACAATTTCATGATTGCTGGAGCAACCCTGAATTTATCTGAAAGCTTACTTTTTAAATAAA
AATTGACCTTTATCAAGCATTCCTTGAAAGCCCATCATTGATTAACTTCTCAGCAGGTTA
TTAAGACTTGTTCTTCATACTGTGTTAATTAAGCTTCATATTGGCTTGGAGCTCTAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATCTGTCACAATACTGGGTTCATGGCTTTACATACTAAAATTGCTCAATAGAACAGTT
GCCATGGAACAGTCAATTCAATGAGGAAAATTACCATAAAGTAGTCGATTAATTCACCCT
TCTTAGATGTAGACAAATTGTTCTGAATAGATATTTATCTCTAACTCTTGAATTTGATAT
GTTAATAAATATTTTATTAAATGTTAGTAAGTATTAATAGTCTAATGAAATGTTTTCTGT
TTTATACCATATATTTCTATATCTAAAGGATCTCTAGAAATACCAAATTATATTGTGGAA
TATAAAAGCCTTAACTAAGTAATTGTTTCACTATCCTTTGAGTGGCAGATGTCACAGACT
TTATATTTAAAATGATGTTCTATATTATTTTTCCTTACAAACCTTTTGAAAAATAATTTA
ACAATTTCATGATTGCTGGAGCAACCCTGAATTTATCTGAAAGCTTACTTTTTAAATAAA
AATTGACCTTTATCAAGCATTCCTTGAAAGCCCATCATTGATTAACTTCTCAGCAGGTTA
TTAAGACTTGTTCTTCATACTGTGTTAATTAAGCTTCATATTGGCTTGGAGCTCTAACCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-192, gnl|bosTau2|chr4 (2552893-2553086)
               

               
               2-192, gnl|Hg17|chr7 (94681651-94681460)
               

               
               2-192, gnl|Mm7|chr6 (5220473-5220300)
               


               
               353-599, gnl|bosTau2|chr4 (2553358-2553604)
               

               
               353-599, gnl|Hg17|chr7 (94681297-94681052)
               

               
               353-599, gnl|Mm7|chr6 (5220159-5219951)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-192, gnl|bosTau2|chr4 (2552893-2553086)
               

               
               2-192, gnl|Hg17|chr7 (94681651-94681460)
               

               
               2-192, gnl|Mm7|chr6 (5220473-5220300)
               


               
               353-599, gnl|bosTau2|chr4 (2553358-2553604)
               

               
               353-599, gnl|Hg17|chr7 (94681297-94681052)
               

               
               353-599, gnl|Mm7|chr6 (5220159-5219951)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	2-192, gnl\|bosTau2\|chr4 (2552893-2553086)
	2-192, gnl\|Hg17\|chr7 (94681651-94681460)
	2-192, gnl\|Mm7\|chr6 (5220473-5220300)

	353-599, gnl\|bosTau2\|chr4 (2553358-2553604)
	353-599, gnl\|Hg17\|chr7 (94681297-94681052)
	353-599, gnl\|Mm7\|chr6 (5220159-5219951)