Non-Coding RNA Search

Ss1.1-rfat0107_n7.5

Sequence:


               
               TGGCCCGCGGCCCTCGCGTTCCTCTGGGACACCCACCGGGGAGTCAGAGCACGGGGGTAC
CGGCTGCCTTTCAGCTTGAGTGTCTTCATTCCTTGTTACTCTGATCCGGTCTTAGAGCGG
ATAGCGCTTTTCCAGCTGTCATTTATTTCAAGAAAGGCGAATATGCGGAGGCCGAAGCAC
TGTACTCCGCTTACATTCGCCAGTACAAAGTACCGCGACTTCAACCACAGCATCACAGCA
GCAAATGCAGCCCTGAGGATTTGGCTACTGCATATAACAACAGGGGGCAAATCAAGTACT
TCAGGGTTGATTTTTATGACGCCATGGACGACTACACCTCTGCCATAGAAGCCCAACCCG
ATTTTGAAGTTCCGTATTACAACAGAGGGTTGATACTGTATAGGCTGGGATGCTTTGATG
ATGCTTTGGAAGATTTCAAGAAAGTATTAGACTTAAATCCTGGATTTCAAGATGCTATCT
TGAGCTTAAAACAGACTATTCTAGACAAAGAAGAAAAGCAAAGAAGAAATTACTGAAAAT
TTTAACATAATTGTAATAGTCACTCATGGTTCTTGTGTGGCATCTCATTGCGTCTGATTG
AAAGTGGGTGCTAAGCTCTTTTGATGTATATTTAATGTAAAGAGGTTCATGGCTTAGCAC
TGAAAGTGAAATGATGTATGTAAGGTAGTTGATTTTGGCTTGGGTAACTGTTGAATAGGC
ATGCTTTTATAAAGTGTAAATAAGTAATAACAGTGTATAATTGTATATTATTCTTACAGT
AAAATATTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCCGCGGCCCTCGCGTTCCTCTGGGACACCCACCGGGGAGTCAGAGCACGGGGGTAC
CGGCTGCCTTTCAGCTTGAGTGTCTTCATTCCTTGTTACTCTGATCCGGTCTTAGAGCGG
ATAGCGCTTTTCCAGCTGTCATTTATTTCAAGAAAGGCGAATATGCGGAGGCCGAAGCAC
TGTACTCCGCTTACATTCGCCAGTACAAAGTACCGCGACTTCAACCACAGCATCACAGCA
GCAAATGCAGCCCTGAGGATTTGGCTACTGCATATAACAACAGGGGGCAAATCAAGTACT
TCAGGGTTGATTTTTATGACGCCATGGACGACTACACCTCTGCCATAGAAGCCCAACCCG
ATTTTGAAGTTCCGTATTACAACAGAGGGTTGATACTGTATAGGCTGGGATGCTTTGATG
ATGCTTTGGAAGATTTCAAGAAAGTATTAGACTTAAATCCTGGATTTCAAGATGCTATCT
TGAGCTTAAAACAGACTATTCTAGACAAAGAAGAAAAGCAAAGAAGAAATTACTGAAAAT
TTTAACATAATTGTAATAGTCACTCATGGTTCTTGTGTGGCATCTCATTGCGTCTGATTG
AAAGTGGGTGCTAAGCTCTTTTGATGTATATTTAATGTAAAGAGGTTCATGGCTTAGCAC
TGAAAGTGAAATGATGTATGTAAGGTAGTTGATTTTGGCTTGGGTAACTGTTGAATAGGC
ATGCTTTTATAAAGTGTAAATAAGTAATAACAGTGTATAATTGTATATTATTCTTACAGT
AAAATATTTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56606133|ref|NP_001008238.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56606133|ref|NP_001008238.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               408-792, gnl|bosTau2|chr11 (60134395-60134026)
               

               
               408-792, gnl|Hg17|chr2 (20018516-20018143)
               

               
               408-792, gnl|Mm7|chr12 (9061994-9062363)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               408-792, gnl|bosTau2|chr11 (60134395-60134026)
               

               
               408-792, gnl|Hg17|chr2 (20018516-20018143)
               

               
               408-792, gnl|Mm7|chr12 (9061994-9062363)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ste (0.405625)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	408-792, gnl\|bosTau2\|chr11 (60134395-60134026)
	408-792, gnl\|Hg17\|chr2 (20018516-20018143)
	408-792, gnl\|Mm7\|chr12 (9061994-9062363)

	ste (0.405625)
	aor (0.195274)
	fat (0.147427)
	sug (0.127291)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)