Non-Coding RNA Search

Ss1.1-rfat0108_e12.5

Sequence:


               
               ATTAACTAGGTTCTCAGATGCCACAGACTCCGTGAAAAGTCACCATTATTTTCAATGGTT
GTGATAGAATTTCCCCCAGTAGCCATTATTTTAAGGTTATATTGCGGAGTTGCTTTATTT
GAGCTTTTTGTGTACACAATCCCAAACTGGAAGAAATAATAATTAAAAAAAGAGGAATCC
TGCTGTGAAAGGTATATATTACTCTAGATTTTTCTTACTGTAAATATTGTAAGATTGTAA
TACTGTCGATATTTTATTAACCAACAAATGTTAATCTATGTGAATTCAGACTTATTTTAA
ATGTGCTTCTTATTTACTGTGTGTGGTCCCTGTTGCTGACAGTATTAAGTTATATTCTGA
TGTAAGATTAACTTTATTAAAGAATGTAAACATTAATGTTTCCTTATGGGAAAACAAATA
AAGTATAAAGAAGACAATTCTTTTCATTAAAATATACTGTGTATTTACACTTGCTAGACC
CAGCACCACTTACAAATTTAGTACACTGTTCAAAATTTTAGTTAACACAGCTGACACGGT
TGTGCTCTGTTTGAAAGTCTAAGAGTAGATATTGTTGGAATATCAACAGTTTGTATTTGT
CTGCTGTGAAAAATAATATTGAAATTTCTAATGGAGTTTGTAAAATTTTTATAGTAAAAC
ATTTTAATGACAGTTTAAAAATTTATCTTCTCTGAAGGATGGTCAAAACAGTATCCTTTC
AGAAATAGAATTGTTCTTTAATATCTTTCCAAAATGACTTTGGTTAAATGGACCAGATGT
GTATTAAGTTAAAATTTAGGACAAAGTTGTCATATTCTTTGAGTTTACAAGTTAATCCTT
ATTGGAGACGTGCCAATTATACAGTAGAATATCATTAATTTGCACTGTTTGGGGACCCCA
TTAAGAATGCTGAATTTTGCCAATTAAGAAGTAAGCAAATGCAACTTAAAAAGTAAATTT
GAGCATTCTGTATTAAATATGTGCAGTTATTATCACATGAAGAAGCGCAGTGTGTCGGGC
TGTAATATAACCATACTTGCTGTCATGTTCTCCCATCTCAGTGCTGGGAACTCACCATGT
GGAAACCAAGCAAATGTGTTGTGCATCAGCCGGCTTGAGTTTGTTCAATATCAAAGCTGA
AACTAGCGAGGTCTGCTGTACTGCTTATTGAAGTATTGTGATTCTTTTAGGCATTGATTC
TTACAAAATATATACTGTAACAGTATACTTTGTACAGATTTAAATTTTATTTGAAAAAAT
GAAATAAAGTAGGCAAAAAAATAAAGATGTTTATTTTTCATGTGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAACTAGGTTCTCAGATGCCACAGACTCCGTGAAAAGTCACCATTATTTTCAATGGTT
GTGATAGAATTTCCCCCAGTAGCCATTATTTTAAGGTTATATTGCGGAGTTGCTTTATTT
GAGCTTTTTGTGTACACAATCCCAAACTGGAAGAAATAATAATTAAAAAAAGAGGAATCC
TGCTGTGAAAGGTATATATTACTCTAGATTTTTCTTACTGTAAATATTGTAAGATTGTAA
TACTGTCGATATTTTATTAACCAACAAATGTTAATCTATGTGAATTCAGACTTATTTTAA
ATGTGCTTCTTATTTACTGTGTGTGGTCCCTGTTGCTGACAGTATTAAGTTATATTCTGA
TGTAAGATTAACTTTATTAAAGAATGTAAACATTAATGTTTCCTTATGGGAAAACAAATA
AAGTATAAAGAAGACAATTCTTTTCATTAAAATATACTGTGTATTTACACTTGCTAGACC
CAGCACCACTTACAAATTTAGTACACTGTTCAAAATTTTAGTTAACACAGCTGACACGGT
TGTGCTCTGTTTGAAAGTCTAAGAGTAGATATTGTTGGAATATCAACAGTTTGTATTTGT
CTGCTGTGAAAAATAATATTGAAATTTCTAATGGAGTTTGTAAAATTTTTATAGTAAAAC
ATTTTAATGACAGTTTAAAAATTTATCTTCTCTGAAGGATGGTCAAAACAGTATCCTTTC
AGAAATAGAATTGTTCTTTAATATCTTTCCAAAATGACTTTGGTTAAATGGACCAGATGT
GTATTAAGTTAAAATTTAGGACAAAGTTGTCATATTCTTTGAGTTTACAAGTTAATCCTT
ATTGGAGACGTGCCAATTATACAGTAGAATATCATTAATTTGCACTGTTTGGGGACCCCA
TTAAGAATGCTGAATTTTGCCAATTAAGAAGTAAGCAAATGCAACTTAAAAAGTAAATTT
GAGCATTCTGTATTAAATATGTGCAGTTATTATCACATGAAGAAGCGCAGTGTGTCGGGC
TGTAATATAACCATACTTGCTGTCATGTTCTCCCATCTCAGTGCTGGGAACTCACCATGT
GGAAACCAAGCAAATGTGTTGTGCATCAGCCGGCTTGAGTTTGTTCAATATCAAAGCTGA
AACTAGCGAGGTCTGCTGTACTGCTTATTGAAGTATTGTGATTCTTTTAGGCATTGATTC
TTACAAAATATATACTGTAACAGTATACTTTGTACAGATTTAAATTTTATTTGAAAAAAT
GAAATAAAGTAGGCAAAAAAATAAAGATGTTTATTTTTCATGTGACTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56611150|gb|AAH17422.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56611150|gb|AAH17422.2|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               40-156, - strand, RNAz p=0.73168
               

               
               516-635, - strand, RNAz p=0.507668
               

               
               874-991, - strand, RNAz p=0.830582
               

               
               1151-1269, - strand, RNAz p=0.60327

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-156, - strand, RNAz p=0.73168
               

               
               516-635, - strand, RNAz p=0.507668
               

               
               874-991, - strand, RNAz p=0.830582
               

               
               1151-1269, - strand, RNAz p=0.60327

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1306, gnl|bosTau2|chr7 (29540933-29539629)
               

               
               1-1306, gnl|Hg17|chr5 (139487272-139488574)
               

               
               1-1306, gnl|Mm7|chr18 (36676322-36677610)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1306, gnl|bosTau2|chr7 (29540933-29539629)
               

               
               1-1306, gnl|Hg17|chr5 (139487272-139488574)
               

               
               1-1306, gnl|Mm7|chr18 (36676322-36677610)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cbe (1.67464)
               

               
               spc (0.566829)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               jca (0.11396)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.67464)
               

               
               spc (0.566829)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               jca (0.11396)

	40-156, - strand, RNAz p=0.73168
	516-635, - strand, RNAz p=0.507668
	874-991, - strand, RNAz p=0.830582
	1151-1269, - strand, RNAz p=0.60327

	1-1306, gnl\|bosTau2\|chr7 (29540933-29539629)
	1-1306, gnl\|Hg17\|chr5 (139487272-139488574)
	1-1306, gnl\|Mm7\|chr18 (36676322-36677610)

	cbe (1.67464)
	spc (0.566829)
	fco (0.471624)
	liv (0.438853)
	spl (0.286369)
	lyg (0.266205)
	bla (0.248694)
	fat (0.147427)
	ski (0.146735)
	hyp (0.142837)
	pla (0.133672)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	jca (0.11396)