Non-Coding RNA Search

Ss1.1-rfat0108_g10.5

Sequence:


               
               TAGGTCACAGACGTGGCTCAGATCCCTTGTTGCTGTGGCTGTGGTGTAGGCTGGCAGTTG
TAGCTCCGATTCGACCCCTAGCCTGGGAATCTCCATATGCCGCAGGTGCGGCCCTAAAAA
GCAAAAGAAATGTTGTCTAAATCCTATACTATAGTTGAGGAAGATCTTCCACTTTATTGT
TTTGCACAGGGAAAGTATGACTGCAGGATCAGTCTAACTATACTATTAGGTGCATGTATT
CTCTTTTCACTAACTTATACTTGTCTATCTAGAATACAGGTCTTCCAACCAGCTGGTCAT
TTACCAGATGTGGAGTTAAGTTGCTGGGCTTGCAATAAGAATTGCTAGTCCCTCATTTTG
CGGGTCTGTGTGGAGCTTTAATCAGTAAATGCCTCCACTTTCTGTATTACATTAACATTG
GCTCATGCATATACCTACCTGCTGCTGTTGTATTTCTCCATCTTAAAGATTTAGAGTGGG
TTAACCAGGTCATTACATCTTAATTTAATAACAAGCATTACTGTAGAGTGATTGTGTATA
GATACCTGTTAGCTGTCAGGGTGTGTTTTTTTTAACCTGTTGTGTGTGTGAGTGGGAGGT
AGGATTAGAAAGGTGAACTGTTCAGGAATTCTCTGCACTAGCTGTGCAGGAGAGCAGATA
ACTAGTGCTGCTCTGGCATTAATCCCAGGAACCACTAGCAGTAGCGGGGCGCCGCCAACC
TAACATGAGCACAGGTGCTTCATGACAAACATTACTCGCATGTTCAACTGCATAATGTTT
TGGCACTGTATTTTGAATGACATTAATTTATTAAATAAATTGTATATATTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGTCACAGACGTGGCTCAGATCCCTTGTTGCTGTGGCTGTGGTGTAGGCTGGCAGTTG
TAGCTCCGATTCGACCCCTAGCCTGGGAATCTCCATATGCCGCAGGTGCGGCCCTAAAAA
GCAAAAGAAATGTTGTCTAAATCCTATACTATAGTTGAGGAAGATCTTCCACTTTATTGT
TTTGCACAGGGAAAGTATGACTGCAGGATCAGTCTAACTATACTATTAGGTGCATGTATT
CTCTTTTCACTAACTTATACTTGTCTATCTAGAATACAGGTCTTCCAACCAGCTGGTCAT
TTACCAGATGTGGAGTTAAGTTGCTGGGCTTGCAATAAGAATTGCTAGTCCCTCATTTTG
CGGGTCTGTGTGGAGCTTTAATCAGTAAATGCCTCCACTTTCTGTATTACATTAACATTG
GCTCATGCATATACCTACCTGCTGCTGTTGTATTTCTCCATCTTAAAGATTTAGAGTGGG
TTAACCAGGTCATTACATCTTAATTTAATAACAAGCATTACTGTAGAGTGATTGTGTATA
GATACCTGTTAGCTGTCAGGGTGTGTTTTTTTTAACCTGTTGTGTGTGTGAGTGGGAGGT
AGGATTAGAAAGGTGAACTGTTCAGGAATTCTCTGCACTAGCTGTGCAGGAGAGCAGATA
ACTAGTGCTGCTCTGGCATTAATCCCAGGAACCACTAGCAGTAGCGGGGCGCCGCCAACC
TAACATGAGCACAGGTGCTTCATGACAAACATTACTCGCATGTTCAACTGCATAATGTTT
TGGCACTGTATTTTGAATGACATTAATTTATTAAATAAATTGTATATATTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               601-719, + strand, RNAz p=0.751442

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               601-719, + strand, RNAz p=0.751442

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               601-844, gnl|bosTau2|chr17 (33777402-33777644)
               

               
               601-844, gnl|Mm7|chr6 (56741123-56740901)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               601-844, gnl|bosTau2|chr17 (33777402-33777644)
               

               
               601-844, gnl|Mm7|chr6 (56741123-56740901)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               tra (0.369276)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	601-844, gnl\|bosTau2\|chr17 (33777402-33777644)
	601-844, gnl\|Mm7\|chr6 (56741123-56740901)

	tra (0.369276)
	tbr (0.308356)
	fat (0.294855)
	thg (0.253582)
	aor (0.195274)
	cmu (0.186393)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	ski (0.146735)
	kid (0.129735)
	ret (0.128733)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)