Ss1.1-rfat0108_i22.5
|
CTGGGACCAGGGGAATGTCCCGGCCCGAGTTCGCCAGGACTCCCACTCTGTTCCGCTCAT
CTCTGCCGCTGTCAGCAGGGCCTGAGGTTCGCCGCGTTACGAAATGGCCGAACAGTCCGA
CAAAGCCGTGAAGTATTACACCCTGGAAGAGATCCAGAAGCACAACAACAGCAAGAGCAC
CTGGCTAATCCTGCACCACAAAGTGTACGATTTGACCAAATTTTTGGAGGAGCATCCTGG
TGGGGAAGAAGTCTTAAGGGAACAAGCTGGAGGTGATGCTACTGAAAATTTTGAGGATGT
TGGACACTCCACAGATGCTCGAGAGTTGTCCAAAACGTTCATCATTGGGGAGCTGCATCC
GGATGACAGATCAAAGATTGCCAAGCCTTCGGAAACTCTTATTACCACTGTTGAATCTAA
TTCCAGCTGGTGGACCAACTGGGTGATCCCAGCCATCTCAGCACTGGTTGTATCCCTGAT
GTATCACTTCTACACATCGGAAAACTAAAAACATTCTCAGAAGCCAATGGAAGAAAAGAC
TGCTCTGGTCCAGGGAGAAAGAAGCTACCATTAACTGCCTTGATTGACAGAATACTTCAC
TGGAAAATAATTTCAGTATACCTGTTTCCTTTTCCTCCTGCATTAGTCATAAAACAAATC
AAAAAGCACTGTTCTATTCTTTCTACTCCTCAACTTTTAGAGTGTGCCTTTTTATTCATC
AGCTTTGTTTTGATGTTCCATCACTACATCATTTGCTTAGTGTGGGCACAATCTTTTAAA
ACCTATCACATTTGCCTGTCTCTTTGGTGTATAATTGTCTGTAACGTTTGAAATCTGATT
ATTTGGCAGTCATTTAATATGCTGATCACTCAGACCTGCGTTGTCTGTCTCGTGCGAGGA
GGAGCATCCTTGAGTCTCTTACTCTGCTGTTTCATCTAATTGAATAATCAGGTACTACAT
GTTTCCAATGTAGTTTTTCCCCCCAAGGGAAATATGAAAAGCCCAGAAATAATAGCTTAA
AGATTTCTAATAGTTGTTCTACTTGAAAAGTTGAATAGATGATAAAAAGGAAAAATGCCC
TATAGGACAGAGAAAAGAGACTCCATCTCTTTGATTAAAAAAACACTAGCAACATCAACA
AAAGCCTGTGAACCATGAGAGAACATTACCACTGTCCCTTCTCTCAGCTTAAAAGATGTC
ATTCCAAAGAGGTTCTCGGTTACAAAGGTTCTAAAGTTTTACAGATTCCTCCTTCAGAGG
TGAAAACTGTTTATGTGCTCCTGTAAGGAAATGCTGATTCTCTTAATTTGAAAGACATTG
GCACATTTGGAATCTGATTTTTGAAGAAATTTAGCTTCTGGTGATGGGCCATAAGGAACT
CTGGTGTGGCTCCAGTGGACTGACTCATCATCTGTCTTCATTTTTCTCAGCCTCATGCTT
TTTTTCTTTAAATATGGAAACTTGAGAGATGATTTTATAGAGTTGAAGTACTTCATAGTT
AGCAATGATTGTCCATTGGCGTGCTAGATGATTTATGAGCCATGGAGTTCTAGAGAAATA
ACTAAAACACATTGGAAAGGAATTTTTCTAAATAACAGAGCATCATAGATTTTTATAATC
AATGACGTATATCACCCTCTGCCTGGAAGTTAGAGTGAAGTTGGAGGGCGGTGGAGCAGG
TGGCTGTGTCGTGTGGGAAAATGCCTGGCAGAGGAATCCTTTGTTCAGATTTTAATAAAC
ATATATCTGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGGGACCAGGGGAATGTCCCGGCCCGAGTTCGCCAGGACTCCCACTCTGTTCCGCTCAT
CTCTGCCGCTGTCAGCAGGGCCTGAGGTTCGCCGCGTTACGAAATGGCCGAACAGTCCGA
CAAAGCCGTGAAGTATTACACCCTGGAAGAGATCCAGAAGCACAACAACAGCAAGAGCAC
CTGGCTAATCCTGCACCACAAAGTGTACGATTTGACCAAATTTTTGGAGGAGCATCCTGG
TGGGGAAGAAGTCTTAAGGGAACAAGCTGGAGGTGATGCTACTGAAAATTTTGAGGATGT
TGGACACTCCACAGATGCTCGAGAGTTGTCCAAAACGTTCATCATTGGGGAGCTGCATCC
GGATGACAGATCAAAGATTGCCAAGCCTTCGGAAACTCTTATTACCACTGTTGAATCTAA
TTCCAGCTGGTGGACCAACTGGGTGATCCCAGCCATCTCAGCACTGGTTGTATCCCTGAT
GTATCACTTCTACACATCGGAAAACTAAAAACATTCTCAGAAGCCAATGGAAGAAAAGAC
TGCTCTGGTCCAGGGAGAAAGAAGCTACCATTAACTGCCTTGATTGACAGAATACTTCAC
TGGAAAATAATTTCAGTATACCTGTTTCCTTTTCCTCCTGCATTAGTCATAAAACAAATC
AAAAAGCACTGTTCTATTCTTTCTACTCCTCAACTTTTAGAGTGTGCCTTTTTATTCATC
AGCTTTGTTTTGATGTTCCATCACTACATCATTTGCTTAGTGTGGGCACAATCTTTTAAA
ACCTATCACATTTGCCTGTCTCTTTGGTGTATAATTGTCTGTAACGTTTGAAATCTGATT
ATTTGGCAGTCATTTAATATGCTGATCACTCAGACCTGCGTTGTCTGTCTCGTGCGAGGA
GGAGCATCCTTGAGTCTCTTACTCTGCTGTTTCATCTAATTGAATAATCAGGTACTACAT
GTTTCCAATGTAGTTTTTCCCCCCAAGGGAAATATGAAAAGCCCAGAAATAATAGCTTAA
AGATTTCTAATAGTTGTTCTACTTGAAAAGTTGAATAGATGATAAAAAGGAAAAATGCCC
TATAGGACAGAGAAAAGAGACTCCATCTCTTTGATTAAAAAAACACTAGCAACATCAACA
AAAGCCTGTGAACCATGAGAGAACATTACCACTGTCCCTTCTCTCAGCTTAAAAGATGTC
ATTCCAAAGAGGTTCTCGGTTACAAAGGTTCTAAAGTTTTACAGATTCCTCCTTCAGAGG
TGAAAACTGTTTATGTGCTCCTGTAAGGAAATGCTGATTCTCTTAATTTGAAAGACATTG
GCACATTTGGAATCTGATTTTTGAAGAAATTTAGCTTCTGGTGATGGGCCATAAGGAACT
CTGGTGTGGCTCCAGTGGACTGACTCATCATCTGTCTTCATTTTTCTCAGCCTCATGCTT
TTTTTCTTTAAATATGGAAACTTGAGAGATGATTTTATAGAGTTGAAGTACTTCATAGTT
AGCAATGATTGTCCATTGGCGTGCTAGATGATTTATGAGCCATGGAGTTCTAGAGAAATA
ACTAAAACACATTGGAAAGGAATTTTTCTAAATAACAGAGCATCATAGATTTTTATAATC
AATGACGTATATCACCCTCTGCCTGGAAGTTAGAGTGAAGTTGGAGGGCGGTGGAGCAGG
TGGCTGTGTCGTGTGGGAAAATGCCTGGCAGAGGAATCCTTTGTTCAGATTTTAATAAAC
ATATATCTGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|48976129|ref|NP_001001770.1| |
Protein identifier
|
gi|48976129|ref|NP_001001770.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
221-362, gnl|bosTau2|chr18 (13776878-13776737) |
|
221-362, gnl|canFam2|chr5 (83229891-83229766) |
|
221-362, gnl|dasNov1|scaffold_54981 (7577-7702) |
|
221-362, gnl|echTel1|scaffold_288887 (78781-78888) |
|
221-362, gnl|fr1|chrUn (219031757-219031879) |
|
221-362, gnl|galGal2|chr1 (173592963-173593088) |
|
221-362, gnl|hg17|chr15 (44907177-44907302) |
|
221-362, gnl|Hg17|chr16 (68038542-68038683) |
|
221-362, gnl|mm7|chr3 (108269828-108269703) |
|
221-362, gnl|Mm7|chr8 (105769936-105770077) |
|
221-362, gnl|monDom2|scaffold_4 (28396292-28396167) |
|
221-362, gnl|oryCun1|scaffold_65937 (2140-2262) |
|
221-362, gnl|panTro1|chr16 (44876563-44876688) |
|
221-362, gnl|rheMac2|chr7 (25147764-25147889) |
|
221-362, gnl|rn3|chr2 (203979855-203979732) |
|
221-362, gnl|tetNig1|chr5 (6020187-6020312) |
| |
|
421-1300, gnl|bosTau2|chr24 (3913767-3912883) |
| |
|
1319-1757, gnl|bosTau2|chr24 (3912556-3912113) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
221-362, gnl|bosTau2|chr18 (13776878-13776737) |
|
221-362, gnl|canFam2|chr5 (83229891-83229766) |
|
221-362, gnl|dasNov1|scaffold_54981 (7577-7702) |
|
221-362, gnl|echTel1|scaffold_288887 (78781-78888) |
|
221-362, gnl|fr1|chrUn (219031757-219031879) |
|
221-362, gnl|galGal2|chr1 (173592963-173593088) |
|
221-362, gnl|hg17|chr15 (44907177-44907302) |
|
221-362, gnl|Hg17|chr16 (68038542-68038683) |
|
221-362, gnl|mm7|chr3 (108269828-108269703) |
|
221-362, gnl|Mm7|chr8 (105769936-105770077) |
|
221-362, gnl|monDom2|scaffold_4 (28396292-28396167) |
|
221-362, gnl|oryCun1|scaffold_65937 (2140-2262) |
|
221-362, gnl|panTro1|chr16 (44876563-44876688) |
|
221-362, gnl|rheMac2|chr7 (25147764-25147889) |
|
221-362, gnl|rn3|chr2 (203979855-203979732) |
|
221-362, gnl|tetNig1|chr5 (6020187-6020312) |
| |
|
421-1300, gnl|bosTau2|chr24 (3913767-3912883) |
| |
|
1319-1757, gnl|bosTau2|chr24 (3912556-3912113) |
|
cte (9.36768) |
|
lun (3.91272) |
|
tes (3.74065) |
|
cmu (2.7959) |
|
kid (1.29735) |
|
cki (0.991408) |
|
mgp (0.922722) |
|
clu (0.837521) |
|
cty (0.832639) |
|
mga (0.801025) |
|
duo (0.691204) |
|
ova (0.645661) |
|
ski (0.586941) |
|
spc (0.566829) |
|
mgm (0.541028) |
|
sug (0.509165) |
|
tra (0.492368) |
|
fat (0.442282) |
|
amn (0.417711) |
|
elu (0.385356) |
|
nep (0.36785) |
|
sto (0.359648) |
|
gul (0.355177) |
|
fty (0.351679) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
rec (0.346141) |
|
jca (0.34188) |
|
eye (0.341006) |
|
eje (0.296501) |
|
lin (0.291206) |
|
spl (0.286369) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
ese (0.253004) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
pan (0.23596) |
|
cbl (0.229595) |
|
hea (0.204499) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
cut (0.169924) |
|
nje (0.16592) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
eli (0.151814) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
ret (0.128733) |
|
eep (0.122564) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
|
cte (9.36768) |
|
lun (3.91272) |
|
tes (3.74065) |
|
cmu (2.7959) |
|
kid (1.29735) |
|
cki (0.991408) |
|
mgp (0.922722) |
|
clu (0.837521) |
|
cty (0.832639) |
|
mga (0.801025) |
|
duo (0.691204) |
|
ova (0.645661) |
|
ski (0.586941) |
|
spc (0.566829) |
|
mgm (0.541028) |
|
sug (0.509165) |
|
tra (0.492368) |
|
fat (0.442282) |
|
amn (0.417711) |
|
elu (0.385356) |
|
nep (0.36785) |
|
sto (0.359648) |
|
gul (0.355177) |
|
fty (0.351679) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
rec (0.346141) |
|
jca (0.34188) |
|
eye (0.341006) |
|
eje (0.296501) |
|
lin (0.291206) |
|
spl (0.286369) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
ese (0.253004) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
pan (0.23596) |
|
cbl (0.229595) |
|
hea (0.204499) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
cut (0.169924) |
|
nje (0.16592) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
eli (0.151814) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
ret (0.128733) |
|
eep (0.122564) |
|
eru (0.120048) |
|
med (0.116252) |
|
ecc (0.115035) |
|
nbm (0.0993246) |
