Ss1.1-rfat0109_i18.5
|
GGAAGGGACCAATTTGATGCCATTTTCCTTTTCTTTCCAGTAAGCCTTTGTAGTCTGTTG
CCTGAGGCAATGGACAGTAGAATAGTGTGTGATGAAATAAAGAGAAAGGAGTAGAGGCAT
GACCTAATGATTAGAGACAGCAGGCATCTACTCACTGTGTTTGGCATTGTTCTCTACAAG
AAAACTGCCCACTACCACTAACTTGGCCAATGGGAATTTCAAATAGTAAACCAATAGCAT
AAAAACATCCTCTCAAATGTTTCCTGATGAAATACAAGCTGAAATGAAGTCATTGGAAAA
GTTTGTAAACTTGTGAATTATAATAGTCAAAAAAGACACAAATATTAAGGAAGATTTCTT
GATGCATAGACAGGTATTTTTAGGATGTACGTACTATATTTCTGCTCTAAGGAAAAGCAG
TGTGCTTTATATAGGAGCAGAGGATAAATTTAAGCTAAGATCATCTAAATTATACCCATA
ATATAGGTTACCTTCTGAATAATTTGTTTAGTTTATATTTGATTCCCTGGGTAATTAGAT
GTGGGCAAGGGTTCGTCCTGGATAGTGGACAATAAAAGAGGCCTAAATTGCCTCTGCAGC
CACTGACATGTATTTCTTCATGGGGAAGAGTATCATTTTCCCCGATCATGACCACTAAAT
CATAAACTGATACAATGGCTTTCTCCAGAGTTTTTGCATACAAATAATGAAGGCTTAGAG
AGCCTTGGTTGAAATAAACTCCTAATGGTTTGGAAACCAATAAAGAAACATGCATGTGTA
ACTATTATCTGTAGGCTGTTACTATGCTAGTCTCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGAAGGGACCAATTTGATGCCATTTTCCTTTTCTTTCCAGTAAGCCTTTGTAGTCTGTTG
CCTGAGGCAATGGACAGTAGAATAGTGTGTGATGAAATAAAGAGAAAGGAGTAGAGGCAT
GACCTAATGATTAGAGACAGCAGGCATCTACTCACTGTGTTTGGCATTGTTCTCTACAAG
AAAACTGCCCACTACCACTAACTTGGCCAATGGGAATTTCAAATAGTAAACCAATAGCAT
AAAAACATCCTCTCAAATGTTTCCTGATGAAATACAAGCTGAAATGAAGTCATTGGAAAA
GTTTGTAAACTTGTGAATTATAATAGTCAAAAAAGACACAAATATTAAGGAAGATTTCTT
GATGCATAGACAGGTATTTTTAGGATGTACGTACTATATTTCTGCTCTAAGGAAAAGCAG
TGTGCTTTATATAGGAGCAGAGGATAAATTTAAGCTAAGATCATCTAAATTATACCCATA
ATATAGGTTACCTTCTGAATAATTTGTTTAGTTTATATTTGATTCCCTGGGTAATTAGAT
GTGGGCAAGGGTTCGTCCTGGATAGTGGACAATAAAAGAGGCCTAAATTGCCTCTGCAGC
CACTGACATGTATTTCTTCATGGGGAAGAGTATCATTTTCCCCGATCATGACCACTAAAT
CATAAACTGATACAATGGCTTTCTCCAGAGTTTTTGCATACAAATAATGAAGGCTTAGAG
AGCCTTGGTTGAAATAAACTCCTAATGGTTTGGAAACCAATAAAGAAACATGCATGTGTA
ACTATTATCTGTAGGCTGTTACTATGCTAGTCTCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
693-808, HW_Loin_6_D07 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV798512.1|), blast E-value=9e-19, identity=86.21% |
|
693-808, LB0203.CR_O16 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV822450.1|),
blast E-value=9e-19, identity=86.21% |
|
693-808, LB02024.CR_F20 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV825691.1|),
blast E-value=9e-19, identity=86.21% |
|
693-808, 001020BUTA001621HT BUTA Bos taurus cDNA, mRNA sequence
(gb|DY109717.1|), blast E-value=9e-19, identity=86.21% |
|
693-808, 001017BEMN042270HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY123077.1|), blast E-value=9e-19, identity=86.21% |
|
693-808, LB02940.CR_L04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351926.1|),
blast E-value=9e-19, identity=86.21% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
693-808, HW_Loin_6_D07 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV798512.1|), blast E-value=9e-19, identity=86.21% |
|
693-808, LB0203.CR_O16 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV822450.1|),
blast E-value=9e-19, identity=86.21% |
|
693-808, LB02024.CR_F20 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV825691.1|),
blast E-value=9e-19, identity=86.21% |
|
693-808, 001020BUTA001621HT BUTA Bos taurus cDNA, mRNA sequence
(gb|DY109717.1|), blast E-value=9e-19, identity=86.21% |
|
693-808, 001017BEMN042270HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY123077.1|), blast E-value=9e-19, identity=86.21% |
|
693-808, LB02940.CR_L04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351926.1|),
blast E-value=9e-19, identity=86.21% |
|
2-408, gnl|bosTau2|chr9 (59528273-59527854) |
|
2-408, gnl|canFam2|chr14 (21308407-21308754) |
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2-408, gnl|dasNov1|scaffold_36004 (5537-5815) |
|
2-408, gnl|echTel1|scaffold_312325 (40556-40214) |
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2-408, gnl|hg17|chr1 (223758450-223758789) |
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2-408, gnl|Hg17|chr3 (133878358-133878770) |
|
2-408, gnl|loxAfr1|scaffold_34679 (12529-12865) |
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2-408, gnl|mm7|chr9 (103763123-103763493) |
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2-408, gnl|panTro1|chr1 (207594591-207594929) |
|
2-408, gnl|rheMac2|chr1 (143103678-143103343) |
|
2-408, gnl|rn3|chr8 (109128566-109128862) |
| |
|
418-816, gnl|bosTau2|chr9 (59527628-59527247) |
|
418-816, gnl|canFam2|chr23 (32710557-32710804) |
|
418-816, gnl|dasNov1|scaffold_1672 (30733-30943) |
|
418-816, gnl|echTel1|scaffold_312325 (40571-40830) |
|
418-816, gnl|hg17|chr3 (133878803-133879059) |
|
418-816, gnl|Hg17|chr3 (133878818-133879203) |
|
418-816, gnl|loxAfr1|scaffold_34679 (12513-12277) |
|
418-816, gnl|mm7|chr9 (103763106-103762885) |
|
418-816, gnl|panTro1|chr2 (136017898-136018154) |
|
418-816, gnl|rheMac2|chr2 (155014885-155014626) |
|
418-816, gnl|rn3|chr8 (109128549-109128382) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-408, gnl|bosTau2|chr9 (59528273-59527854) |
|
2-408, gnl|canFam2|chr14 (21308407-21308754) |
|
2-408, gnl|dasNov1|scaffold_36004 (5537-5815) |
|
2-408, gnl|echTel1|scaffold_312325 (40556-40214) |
|
2-408, gnl|hg17|chr1 (223758450-223758789) |
|
2-408, gnl|Hg17|chr3 (133878358-133878770) |
|
2-408, gnl|loxAfr1|scaffold_34679 (12529-12865) |
|
2-408, gnl|mm7|chr9 (103763123-103763493) |
|
2-408, gnl|panTro1|chr1 (207594591-207594929) |
|
2-408, gnl|rheMac2|chr1 (143103678-143103343) |
|
2-408, gnl|rn3|chr8 (109128566-109128862) |
| |
|
418-816, gnl|bosTau2|chr9 (59527628-59527247) |
|
418-816, gnl|canFam2|chr23 (32710557-32710804) |
|
418-816, gnl|dasNov1|scaffold_1672 (30733-30943) |
|
418-816, gnl|echTel1|scaffold_312325 (40571-40830) |
|
418-816, gnl|hg17|chr3 (133878803-133879059) |
|
418-816, gnl|Hg17|chr3 (133878818-133879203) |
|
418-816, gnl|loxAfr1|scaffold_34679 (12513-12277) |
|
418-816, gnl|mm7|chr9 (103763106-103762885) |
|
418-816, gnl|panTro1|chr2 (136017898-136018154) |
|
418-816, gnl|rheMac2|chr2 (155014885-155014626) |
|
418-816, gnl|rn3|chr8 (109128549-109128382) |
|
sin (0.174948) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
kid (0.129735) |
|
sin (0.174948) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
kid (0.129735) |
