Non-Coding RNA Search

Ss1.1-rfat0109_j17.5

Sequence:


               
               ACAACTTTCTTTTCAACTCTTCCGAAATCTCTTAGGACATTCTTATGAAATAATCTGTTT
ATAATTCTCCTATCTTTTCAGATTTGATTCCTTTTTACACAAAACTATATACATATCAAA
TATTGTAGTCCCAAAATAATTTAGTTTCTAGCTTTTGCTTTTGTTTGAAAAATCCCAGTG
AAGAATGGCCTGTTCCTCCTTTGGGTTTAGGGTTCTTTGGGCACCTTTAGCAGAAACAAA
GTTAAGGAAGTAATAATAGGACCAGCATACTTGAAACTCTTGAATATTTAAACCAAAGCA
CAGCATCTTTAAACAACTTGCAAAAGACCTTAGTCTTTTAAACCTATAAAATGATACTCA
AACGTCTTGCGTGGTTTAGTTACCTTCTCAGTGTAGATAAACAAGACGCTGTTTTCTGAG
TAACTGTGCCGTCACCACCGGGGGACTAAATGGCCCCTTGACCAGGTAAAATGGTTCACC
ACTTAATAGGCCAAGTTTTACCTTTGTTTTTAATTTCCCTTTTTTCTTCTCTATTTTTAA
AGAAAGATACTAACTTTTGATTTTGCATTAAAAAAATCTAAGCAGGGGGACAGGCTAAAA
CAATCATCATCCGCTTGGATGTCATTTTATAGATTAACACTGTGTGCTTTTGTATAAAAT
ATATAATTTAATAGTATAAGAAAAGAAGATATATATTCATTTGCACTCATGCAAAACAAA
CTTTGCTCTACGAAACTCACATTTCTCTGTGATTTAAAACTGCATGTGTAGCATGTAAGA
GAAAATCATTTCAGTTAATGTTTATCACACCTTTCTCTTGGTCTGTTTGTAAACGGTTGA
TTTGGGTTTTTTGGGGTTTTTTCCTGGTTGTAGTTGTTATTTTTACACAGTAAACTTCTC
TGTATCCTAGCTTACTGAGCTGGTCTTTGTTAACAAGGATTCCCAAGAACTGGTGGATTT
TTCCTTTGACTTGTCCCTTCCAGGAGATTGCAGGAGGTCCTGCAGCTGATAGGTATGCAT
GTAGTCTATCATATTGCCAGTTTGGATATTGAAAGTTTAGGATTAGTTGAAGTTCACTGT
ATTGCTATATTTTTGTAGATATTTAAAGTCTTAATAAAAACTGTTAATCATTCTCTTTTT
GCTGTATACTGTTGCCTGTATCATTTATTTTTTTACCTTGACATTGAACAGTTAACATTT
AAACATCCCTCCTATACTTGTGTTGTCTTTGCTTATGTAGAGTTGTTGGAGTCAACCTGA
ACACACACGCGCACACTCTTCCTAAATACCTTGAACTCATTAGCTTTTAGAATCATAACA
CTCTACTAGCAGTTCACTTCCCCTTCCTCACAGTATTTCCCTGCTTCCTGTCTGAAAATG
GAACTACTTTGTTTTATTCATGCCGGTATATGTACTAAATGTAATGAAGGGAGTTCTTTC
GAAGGGTAAAAATTCACTGTGCAATTTGTATGTAAGCAATAAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACTTTCTTTTCAACTCTTCCGAAATCTCTTAGGACATTCTTATGAAATAATCTGTTT
ATAATTCTCCTATCTTTTCAGATTTGATTCCTTTTTACACAAAACTATATACATATCAAA
TATTGTAGTCCCAAAATAATTTAGTTTCTAGCTTTTGCTTTTGTTTGAAAAATCCCAGTG
AAGAATGGCCTGTTCCTCCTTTGGGTTTAGGGTTCTTTGGGCACCTTTAGCAGAAACAAA
GTTAAGGAAGTAATAATAGGACCAGCATACTTGAAACTCTTGAATATTTAAACCAAAGCA
CAGCATCTTTAAACAACTTGCAAAAGACCTTAGTCTTTTAAACCTATAAAATGATACTCA
AACGTCTTGCGTGGTTTAGTTACCTTCTCAGTGTAGATAAACAAGACGCTGTTTTCTGAG
TAACTGTGCCGTCACCACCGGGGGACTAAATGGCCCCTTGACCAGGTAAAATGGTTCACC
ACTTAATAGGCCAAGTTTTACCTTTGTTTTTAATTTCCCTTTTTTCTTCTCTATTTTTAA
AGAAAGATACTAACTTTTGATTTTGCATTAAAAAAATCTAAGCAGGGGGACAGGCTAAAA
CAATCATCATCCGCTTGGATGTCATTTTATAGATTAACACTGTGTGCTTTTGTATAAAAT
ATATAATTTAATAGTATAAGAAAAGAAGATATATATTCATTTGCACTCATGCAAAACAAA
CTTTGCTCTACGAAACTCACATTTCTCTGTGATTTAAAACTGCATGTGTAGCATGTAAGA
GAAAATCATTTCAGTTAATGTTTATCACACCTTTCTCTTGGTCTGTTTGTAAACGGTTGA
TTTGGGTTTTTTGGGGTTTTTTCCTGGTTGTAGTTGTTATTTTTACACAGTAAACTTCTC
TGTATCCTAGCTTACTGAGCTGGTCTTTGTTAACAAGGATTCCCAAGAACTGGTGGATTT
TTCCTTTGACTTGTCCCTTCCAGGAGATTGCAGGAGGTCCTGCAGCTGATAGGTATGCAT
GTAGTCTATCATATTGCCAGTTTGGATATTGAAAGTTTAGGATTAGTTGAAGTTCACTGT
ATTGCTATATTTTTGTAGATATTTAAAGTCTTAATAAAAACTGTTAATCATTCTCTTTTT
GCTGTATACTGTTGCCTGTATCATTTATTTTTTTACCTTGACATTGAACAGTTAACATTT
AAACATCCCTCCTATACTTGTGTTGTCTTTGCTTATGTAGAGTTGTTGGAGTCAACCTGA
ACACACACGCGCACACTCTTCCTAAATACCTTGAACTCATTAGCTTTTAGAATCATAACA
CTCTACTAGCAGTTCACTTCCCCTTCCTCACAGTATTTCCCTGCTTCCTGTCTGAAAATG
GAACTACTTTGTTTTATTCATGCCGGTATATGTACTAAATGTAATGAAGGGAGTTCTTTC
GAAGGGTAAAAATTCACTGTGCAATTTGTATGTAAGCAATAAAACAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-193, gnl|bosTau2|chr14 (4906611-4906420)
               

               
               2-193, gnl|Hg17|chr8 (133093505-133093697)
               

               
               2-193, gnl|Mm7|chr15 (65955715-65955900)
               


               
               457-1488, gnl|bosTau2|chr14 (4906077-4905040)
               

               
               457-1488, gnl|Hg17|chr8 (133093968-133094992)
               

               
               457-1488, gnl|Mm7|chr15 (65956177-65957169)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-193, gnl|bosTau2|chr14 (4906611-4906420)
               

               
               2-193, gnl|Hg17|chr8 (133093505-133093697)
               

               
               2-193, gnl|Mm7|chr15 (65955715-65955900)
               


               
               457-1488, gnl|bosTau2|chr14 (4906077-4905040)
               

               
               457-1488, gnl|Hg17|chr8 (133093968-133094992)
               

               
               457-1488, gnl|Mm7|chr15 (65956177-65957169)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               liv (0.731422)
               

               
               mga (0.64082)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               hea (0.408998)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.731422)
               

               
               mga (0.64082)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               hea (0.408998)
               

               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	2-193, gnl\|bosTau2\|chr14 (4906611-4906420)
	2-193, gnl\|Hg17\|chr8 (133093505-133093697)
	2-193, gnl\|Mm7\|chr15 (65955715-65955900)

	457-1488, gnl\|bosTau2\|chr14 (4906077-4905040)
	457-1488, gnl\|Hg17\|chr8 (133093968-133094992)
	457-1488, gnl\|Mm7\|chr15 (65956177-65957169)

	liv (0.731422)
	mga (0.64082)
	gul (0.532765)
	thg (0.507164)
	mgp (0.461361)
	fat (0.442282)
	hea (0.408998)
	fbs (0.350693)
	vin (0.332557)
	fco (0.314416)
	cte (0.29274)
	hyp (0.285673)
	kid (0.259471)
	cbe (0.239234)
	spc (0.226732)
	fcc (0.197785)
	aor (0.195274)
	mgm (0.180343)
	sin (0.174948)
	rec (0.17307)
	tbr (0.154178)
	eli (0.151814)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	csk (0.140746)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)