Non-Coding RNA Search

Ss1.1-rfat0109_k8.5

Sequence:


               
               CCAATTCAGCATCACAAAAAGACAACTTCTTTTAGAAACGGAGTGTTTTATCTAAACACA
GCAGTTTATATGTTAGCCAATGTAGGTCTGCACTAGTGTTTTCCACATCTGTCACCTTCT
GAGGTCATGTCCTGTCTACAGCTAGAAGAAGCCACTTCGTGGGGAAGTGTTAATGGTAGC
ACGGTTTCACTTTGGGTGAACCTGGTGATCATGTGTATATACTTAGATTGGCTTCGTTTT
AACATTATAGTCTCTCTGCTACTCCGCACTTCGGGTTCTTAAGCTCTTTTAAACATTACT
GGATTTTGGCAAATAGCAACTGAAATATATATGGCACCTGCTTTCTAGAGCAAGCGTGAT
TTGTTTTATGGCTGTTCAAATTACAAAGGTGTTCTTACACTGTAGGTAAACAAAATCTTG
CTGTTTTTAAAGGTCAGTGTAACTTAAGGTTCAAATTTCTGGCACAATTTTATTAGAATT
CACTTCTGAAGCTAATAAGGCACCACAGTTTTTCTATGTTACTCTCATTGTAACATCAAT
AAAGTGACTTTCAATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAATTCAGCATCACAAAAAGACAACTTCTTTTAGAAACGGAGTGTTTTATCTAAACACA
GCAGTTTATATGTTAGCCAATGTAGGTCTGCACTAGTGTTTTCCACATCTGTCACCTTCT
GAGGTCATGTCCTGTCTACAGCTAGAAGAAGCCACTTCGTGGGGAAGTGTTAATGGTAGC
ACGGTTTCACTTTGGGTGAACCTGGTGATCATGTGTATATACTTAGATTGGCTTCGTTTT
AACATTATAGTCTCTCTGCTACTCCGCACTTCGGGTTCTTAAGCTCTTTTAAACATTACT
GGATTTTGGCAAATAGCAACTGAAATATATATGGCACCTGCTTTCTAGAGCAAGCGTGAT
TTGTTTTATGGCTGTTCAAATTACAAAGGTGTTCTTACACTGTAGGTAAACAAAATCTTG
CTGTTTTTAAAGGTCAGTGTAACTTAAGGTTCAAATTTCTGGCACAATTTTATTAGAATT
CACTTCTGAAGCTAATAAGGCACCACAGTTTTTCTATGTTACTCTCATTGTAACATCAAT
AAAGTGACTTTCAATAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               430-549, + strand, RNAz p=0.831117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               430-549, + strand, RNAz p=0.831117

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-559, gnl|bosTau2|chr4 (41267914-41268463)
               

               
               1-559, gnl|Hg17|chr7 (87476285-87476838)
               

               
               1-559, gnl|Mm7|chr5 (8110570-8110013)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-559, gnl|bosTau2|chr4 (41267914-41268463)
               

               
               1-559, gnl|Hg17|chr7 (87476285-87476838)
               

               
               1-559, gnl|Mm7|chr5 (8110570-8110013)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fat (0.147427)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               spc (0.113366)

	1-559, gnl\|bosTau2\|chr4 (41267914-41268463)
	1-559, gnl\|Hg17\|chr7 (87476285-87476838)
	1-559, gnl\|Mm7\|chr5 (8110570-8110013)