Non-Coding RNA Search

Ss1.1-rfat0109_m12.5

Sequence:


               
               TTTTTTTTTGGGTTCCCATAAAACTTTATTTAAGGACATTGAAAAATCTGAATTTCATAT
AATTTATAATTTTCACATGTCACAAAATATTATTCTTTTGACTTTCTTCAACCGTATAAA
AATATAAAATGCATTCTTAATTCACAGACCATATACAAACAGGCAGTGGGCTGGCTTTTT
GACCCATGCGCAAATAGTTTGTCAACCCCTGGCCTATACCAGACCACCTTCTGAGAAGTG
AGGTTCTCCAATGCCTTTGCTTCAGACACTCTTTGACTGGGTTAGGAAAGACATGCGAAA
AAGAGGATGGAACAGGTTCTTTTGGGGGGCCTTAGATGACCAGGAGAACTGTTGTTCAAG
TACAACAGCCTCAAATTGTGTGGTAGCAATATACAGTTGTTTTCATGTCCTGCTCCAATG
TTAAATTTTTTTTTCATGTCGTCAAAATTAAACAATAAGCTCATTTAGGAAAGATTATTA
TTTTCTTATTTTAAAATTTCCCTTGATGTTTAATAGTCTATGTACAGTACGTGCTCAGTA
AGTATTAATGAATAAATATTAGATGCTGCCAAATATTGTCCTACTTCATTCACAGATTCT
GTTAAATAATCAATGTACACAATATATAAGTTCAGTGATTAAGAAAAATATAGCAGTCAG
GCTATATGTGGGATTTAACTTAACAAAATTACCATTTCCTTTTAATCCAGTATATGGGAC
AATTAGAAAAAATATTTATTGGCCCTACCTTTTTGATTCCAAGTGTTTAAAGTATTCGAA
TGTAAATACTAATGCTGACATTCCTTTCTCCTCTAGAACCATTTTGGTGATCTGGATGGT
GGCCACTACACTGCTTTCTGCAAGAACTCGGTGACCCAGGCCTGGTATAGCTTTGATGAC
ACACGAGTCAGTGAGATTCCGGACACTTCAGTTCAAACTGCTACAGCGTATCTCCTGTTC
TATAGCTGCCAGCCCTTTTCTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTGGGTTCCCATAAAACTTTATTTAAGGACATTGAAAAATCTGAATTTCATAT
AATTTATAATTTTCACATGTCACAAAATATTATTCTTTTGACTTTCTTCAACCGTATAAA
AATATAAAATGCATTCTTAATTCACAGACCATATACAAACAGGCAGTGGGCTGGCTTTTT
GACCCATGCGCAAATAGTTTGTCAACCCCTGGCCTATACCAGACCACCTTCTGAGAAGTG
AGGTTCTCCAATGCCTTTGCTTCAGACACTCTTTGACTGGGTTAGGAAAGACATGCGAAA
AAGAGGATGGAACAGGTTCTTTTGGGGGGCCTTAGATGACCAGGAGAACTGTTGTTCAAG
TACAACAGCCTCAAATTGTGTGGTAGCAATATACAGTTGTTTTCATGTCCTGCTCCAATG
TTAAATTTTTTTTTCATGTCGTCAAAATTAAACAATAAGCTCATTTAGGAAAGATTATTA
TTTTCTTATTTTAAAATTTCCCTTGATGTTTAATAGTCTATGTACAGTACGTGCTCAGTA
AGTATTAATGAATAAATATTAGATGCTGCCAAATATTGTCCTACTTCATTCACAGATTCT
GTTAAATAATCAATGTACACAATATATAAGTTCAGTGATTAAGAAAAATATAGCAGTCAG
GCTATATGTGGGATTTAACTTAACAAAATTACCATTTCCTTTTAATCCAGTATATGGGAC
AATTAGAAAAAATATTTATTGGCCCTACCTTTTTGATTCCAAGTGTTTAAAGTATTCGAA
TGTAAATACTAATGCTGACATTCCTTTCTCCTCTAGAACCATTTTGGTGATCTGGATGGT
GGCCACTACACTGCTTTCTGCAAGAACTCGGTGACCCAGGCCTGGTATAGCTTTGATGAC
ACACGAGTCAGTGAGATTCCGGACACTTCAGTTCAAACTGCTACAGCGTATCTCCTGTTC
TATAGCTGCCAGCCCTTTTCTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               734-852, + strand, RNAz p=0.927233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               734-852, + strand, RNAz p=0.927233

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               13-524, gnl|bosTau2|chr3 (16100837-16101336)
               

               
               13-524, gnl|Hg17|chr15 (48581418-48580616)
               


               
               542-984, gnl|bosTau2|chr3 (16103391-16103831)
               

               
               542-984, gnl|Hg17|chr15 (48580597-48580162)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-524, gnl|bosTau2|chr3 (16100837-16101336)
               

               
               13-524, gnl|Hg17|chr15 (48581418-48580616)
               


               
               542-984, gnl|bosTau2|chr3 (16103391-16103831)
               

               
               542-984, gnl|Hg17|chr15 (48580597-48580162)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               sto (0.359648)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	13-524, gnl\|bosTau2\|chr3 (16100837-16101336)
	13-524, gnl\|Hg17\|chr15 (48581418-48580616)

	542-984, gnl\|bosTau2\|chr3 (16103391-16103831)
	542-984, gnl\|Hg17\|chr15 (48580597-48580162)

	sto (0.359648)
	fat (0.294855)
	lin (0.291206)
	cbe (0.239234)
	cmu (0.186393)
	tbr (0.154178)
	isp (0.150376)
	spl (0.143184)
	csk (0.140746)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)