Ss1.1-rfat0109_p3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGTTGGGGTTGTAGGTTCTACGCGGGTTGGAGGGGCAGGCAGGGGAGCAGTAAGGAA CCCGAGGCGGTCGAGAGACCCGCACGAAGACCCTTCGCTCAGCCCAGAGGCAGTTTGGAG TTTGGCTTAAAGAAAACGAGGGTCAGGCTTTTCCTCGAAAGCCGTCGCCCTCCCCTTGGC TTCCGAGGACAAAGAGCACAAGAAGACTTCACGCTGGGGGCGCTGGGGCCGGCCATGGTC ATGGAAGTGGGATCCCTGGACGCCGGAGGCCTGAGGACGCTGCTGCGGGAGCGCGCGGCG CAGTGTCTGCTGTTGGACTGTCGCTCCTTCTTCGCTTTCAACGCCGGCCACATCGCCGGC TCCGTCAACGTGCGCTTCAGTACCATCGTGCGGCGCCGGGCCAAGGGCGCCATGGGCCTG GAGCACATCGTGCCCAACGCGGAGCTGCGCGGCCGCCTGCTGGCCGGCGCCTACCACGCC GTGGTGCTGCTGGACGAGCGCAGCGCTGCCTTGGAGTGCGCCAAACGCGACGGCACCCTG GCTCTGGCCGCCGGAGCGCTCTGCCGCGAGGCGCGCGGCGCGCAAATCTTCTTGCTCAAA GGAGGATATGAAGCTTTTTCTGTTTCCTGCCCGGAGCTCTGCAGCAAACAGTCGACCCCC ATGGGGCTCAGCCTTCCCCTGAGTACTAGCGTCCCTGACAGCACCGAATCAGGGTGCAGT TCTTGCAGCACTCCACTCTACGATCAGGGTGGCCCAGTGGAGATCCTGCCCTTTCTCTAC CTGGGGAGTGCCTACCATGCTTCTCGCAAGGACATGCTGGATGCCTTGGGTATCACTGCC TTGATCAACGTCTCGGCCAACTGTCCCAACCATTTTGAGGGTCACTACCAGTACAAGAGC ATCCCCGTTGAGGACAACCACAAGGCGGACATCAGCTCCTGGTTCAATGAGGCAATCGAT TTCATCGACTCCATCAAGAATGCCGGCGGAAGGGTGTTTGTCCACTGCCAGGCGGGCATT TCCCGATCGGCCACCATCTGCCTCGCTTACCTCATGAGGACTAACCGAGTCAAGCTGGAC GAGGCCTTTGAGTTTGTGAAGCAGAGGAGGAGCATCATCTCCCCCAACTTCAGCTTCATG GGCCAGCTGCTGCAGTTTGAGTCCCAGGTCCTGGCCCCGCACTGCTCGGCGGAGGCTGGG AGCCCGGCCATGGCCGTGCTGGACCGAGGCGCCTCCACCACCACCGTCTTCAACTTCCCC GTCTCCATCCCCGTCCACCCCACGAACAGTGCGTTGAGCTACCTTCAGAGCCCCATCACG ACCTCTCCCAGCTGCTGAAAGGCCACGGGAGGTGATCTTCACAACCCACCGGGACTCCAG GCTCCTTCTTGCAAGGAGACATGCAATAACTCCAAGGAAGGGGGCTCGCGAGGGCTGGTC CTTCCTTATTTAATTTCATCCGAATTCCACTGGGTTCCTGGGCGGTCCTGGGGATGACTT GGCGCCAAGACCGTCTGCTGAACTCAGCACATTGGGGACCAACATGCCGTGCGTGGGTGC ATCAAGTCTCTGACAAAAGGGGCAGAAGAGAGAGGACTCGGTGTGCGAGCCGATTTTTTT CTGCTGGGCCCTGTTTCCTGAAGAAACTTCATGCTTGACATACCTACCAGTGTTACCATT CCCAATGACACATACGTATGAGACTGGACTTGATTTTATTTATTTTTGTGTCGGTGATCC GCCTTCACAGTTGTCAGCGTCTACTCCTAGAAGAACCATATACCTCAATTTTTGTGTTTG AGTACTGTAACCTCTTGTAAATAGATCCTGAGCAGGTTTGTTTTCAGCACTGATGGAAAG CAGCAGTGTTGGGTTTGTTTGTTTTTTAAGTTGCCAACAGTTGTATGTTTGCTGATTATT TATGACCCGAAATAATATATTTCTTCTTCTACGAAGACATTTTGTTACATAAGGATGACT TTTTATACCGCAGAATAAATTATGGCATTTCTATGGAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGTTGGGGTTGTAGGTTCTACGCGGGTTGGAGGGGCAGGCAGGGGAGCAGTAAGGAA CCCGAGGCGGTCGAGAGACCCGCACGAAGACCCTTCGCTCAGCCCAGAGGCAGTTTGGAG TTTGGCTTAAAGAAAACGAGGGTCAGGCTTTTCCTCGAAAGCCGTCGCCCTCCCCTTGGC TTCCGAGGACAAAGAGCACAAGAAGACTTCACGCTGGGGGCGCTGGGGCCGGCCATGGTC ATGGAAGTGGGATCCCTGGACGCCGGAGGCCTGAGGACGCTGCTGCGGGAGCGCGCGGCG CAGTGTCTGCTGTTGGACTGTCGCTCCTTCTTCGCTTTCAACGCCGGCCACATCGCCGGC TCCGTCAACGTGCGCTTCAGTACCATCGTGCGGCGCCGGGCCAAGGGCGCCATGGGCCTG GAGCACATCGTGCCCAACGCGGAGCTGCGCGGCCGCCTGCTGGCCGGCGCCTACCACGCC GTGGTGCTGCTGGACGAGCGCAGCGCTGCCTTGGAGTGCGCCAAACGCGACGGCACCCTG GCTCTGGCCGCCGGAGCGCTCTGCCGCGAGGCGCGCGGCGCGCAAATCTTCTTGCTCAAA GGAGGATATGAAGCTTTTTCTGTTTCCTGCCCGGAGCTCTGCAGCAAACAGTCGACCCCC ATGGGGCTCAGCCTTCCCCTGAGTACTAGCGTCCCTGACAGCACCGAATCAGGGTGCAGT TCTTGCAGCACTCCACTCTACGATCAGGGTGGCCCAGTGGAGATCCTGCCCTTTCTCTAC CTGGGGAGTGCCTACCATGCTTCTCGCAAGGACATGCTGGATGCCTTGGGTATCACTGCC TTGATCAACGTCTCGGCCAACTGTCCCAACCATTTTGAGGGTCACTACCAGTACAAGAGC ATCCCCGTTGAGGACAACCACAAGGCGGACATCAGCTCCTGGTTCAATGAGGCAATCGAT TTCATCGACTCCATCAAGAATGCCGGCGGAAGGGTGTTTGTCCACTGCCAGGCGGGCATT TCCCGATCGGCCACCATCTGCCTCGCTTACCTCATGAGGACTAACCGAGTCAAGCTGGAC GAGGCCTTTGAGTTTGTGAAGCAGAGGAGGAGCATCATCTCCCCCAACTTCAGCTTCATG GGCCAGCTGCTGCAGTTTGAGTCCCAGGTCCTGGCCCCGCACTGCTCGGCGGAGGCTGGG AGCCCGGCCATGGCCGTGCTGGACCGAGGCGCCTCCACCACCACCGTCTTCAACTTCCCC GTCTCCATCCCCGTCCACCCCACGAACAGTGCGTTGAGCTACCTTCAGAGCCCCATCACG ACCTCTCCCAGCTGCTGAAAGGCCACGGGAGGTGATCTTCACAACCCACCGGGACTCCAG GCTCCTTCTTGCAAGGAGACATGCAATAACTCCAAGGAAGGGGGCTCGCGAGGGCTGGTC CTTCCTTATTTAATTTCATCCGAATTCCACTGGGTTCCTGGGCGGTCCTGGGGATGACTT GGCGCCAAGACCGTCTGCTGAACTCAGCACATTGGGGACCAACATGCCGTGCGTGGGTGC ATCAAGTCTCTGACAAAAGGGGCAGAAGAGAGAGGACTCGGTGTGCGAGCCGATTTTTTT CTGCTGGGCCCTGTTTCCTGAAGAAACTTCATGCTTGACATACCTACCAGTGTTACCATT CCCAATGACACATACGTATGAGACTGGACTTGATTTTATTTATTTTTGTGTCGGTGATCC GCCTTCACAGTTGTCAGCGTCTACTCCTAGAAGAACCATATACCTCAATTTTTGTGTTTG AGTACTGTAACCTCTTGTAAATAGATCCTGAGCAGGTTTGTTTTCAGCACTGATGGAAAG CAGCAGTGTTGGGTTTGTTTGTTTTTTAAGTTGCCAACAGTTGTATGTTTGCTGATTATT TATGACCCGAAATAATATATTTCTTCTTCTACGAAGACATTTTGTTACATAAGGATGACT TTTTATACCGCAGAATAAATTATGGCATTTCTATGGAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 2-602, gnl|bosTau2|chr20 (3120972-3120373) | |
| 2-602, gnl|canFam2|chr4 (42779789-42779414) | |
| 2-602, gnl|danRer3|chr11 (9490303-9489938) | |
| 2-602, gnl|dasNov1|scaffold_84931 (4971-5360) | |
| 2-602, gnl|echTel1|scaffold_312268 (50954-51353) | |
| 2-602, gnl|fr1|chrUn (158482972-158483355) | |
| 2-602, gnl|galGal2|chrUn (53054416-53054037) | |
| 2-602, gnl|hg17|chr5 (172130190-172130589) | |
| 2-602, gnl|Hg17|chr5 (172130798-172130194) | |
| 2-602, gnl|loxAfr1|scaffold_3893 (40083-40482) | |
| 2-602, gnl|mm7|chr17 (24692499-24692898) | |
| 2-602, gnl|Mm7|chr17 (24693012-24692503) | |
| 2-602, gnl|monDom2|scaffold_6 (27814019-27813617) | |
| 2-602, gnl|oryCun1|scaffold_174113 (18484-18085) | |
| 2-602, gnl|panTro1|chr4 (179454564-179454963) | |
| 2-602, gnl|rheMac2|chr6 (169162648-169163047) | |
| 2-602, gnl|rn3|chr10 (16944475-16944076) | |
| 2-602, gnl|tetNig1|chr1 (2062003-2062386) | |
| 2-602, gnl|xenTro1|scaffold_201 (1695978-1696380) | |
| 745-965, gnl|bosTau2|chr11 (1784215-1784435) | |
| 745-965, gnl|Hg17|chr2 (96231989-96231769) | |
| 745-965, gnl|Mm7|chr2 (127078099-127078319) | |
| 967-1172, gnl|bosTau2|chr11 (1784568-1784773) | |
| 967-1172, gnl|Hg17|chr2 (96231651-96231446) | |
| 967-1172, gnl|Mm7|chr2 (127078433-127078638) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-602, gnl|bosTau2|chr20 (3120972-3120373) | |
| 2-602, gnl|canFam2|chr4 (42779789-42779414) | |
| 2-602, gnl|danRer3|chr11 (9490303-9489938) | |
| 2-602, gnl|dasNov1|scaffold_84931 (4971-5360) | |
| 2-602, gnl|echTel1|scaffold_312268 (50954-51353) | |
| 2-602, gnl|fr1|chrUn (158482972-158483355) | |
| 2-602, gnl|galGal2|chrUn (53054416-53054037) | |
| 2-602, gnl|hg17|chr5 (172130190-172130589) | |
| 2-602, gnl|Hg17|chr5 (172130798-172130194) | |
| 2-602, gnl|loxAfr1|scaffold_3893 (40083-40482) | |
| 2-602, gnl|mm7|chr17 (24692499-24692898) | |
| 2-602, gnl|Mm7|chr17 (24693012-24692503) | |
| 2-602, gnl|monDom2|scaffold_6 (27814019-27813617) | |
| 2-602, gnl|oryCun1|scaffold_174113 (18484-18085) | |
| 2-602, gnl|panTro1|chr4 (179454564-179454963) | |
| 2-602, gnl|rheMac2|chr6 (169162648-169163047) | |
| 2-602, gnl|rn3|chr10 (16944475-16944076) | |
| 2-602, gnl|tetNig1|chr1 (2062003-2062386) | |
| 2-602, gnl|xenTro1|scaffold_201 (1695978-1696380) | |
| 745-965, gnl|bosTau2|chr11 (1784215-1784435) | |
| 745-965, gnl|Hg17|chr2 (96231989-96231769) | |
| 745-965, gnl|Mm7|chr2 (127078099-127078319) | |
| 967-1172, gnl|bosTau2|chr11 (1784568-1784773) | |
| 967-1172, gnl|Hg17|chr2 (96231651-96231446) | |
| 967-1172, gnl|Mm7|chr2 (127078433-127078638) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| sug (3.69145) | |
| lyg (2.52895) | |
| gul (1.77588) | |
| bla (0.87043) | |
| amn (0.835422) | |
| mga (0.801025) | |
| liv (0.731422) | |
| mgm (0.721371) | |
| vin (0.665115) | |
| sme (0.610874) | |
| cmu (0.55918) | |
| sag (0.548145) | |
| rec (0.519211) | |
| cut (0.509771) | |
| isp (0.451128) | |
| bfe (0.449573) | |
| ski (0.440205) | |
| ldo (0.38801) | |
| tra (0.369276) | |
| ill (0.351185) | |
| sin (0.349895) | |
| duo (0.345602) | |
| jca (0.34188) | |
| spc (0.340097) | |
| tbr (0.308356) | |
| cli (0.305623) | |
| eje (0.296501) | |
| fat (0.294855) | |
| che (0.272628) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ret (0.257467) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| csk (0.140746) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (3.69145) | |
| lyg (2.52895) | |
| gul (1.77588) | |
| bla (0.87043) | |
| amn (0.835422) | |
| mga (0.801025) | |
| liv (0.731422) | |
| mgm (0.721371) | |
| vin (0.665115) | |
| sme (0.610874) | |
| cmu (0.55918) | |
| sag (0.548145) | |
| rec (0.519211) | |
| cut (0.509771) | |
| isp (0.451128) | |
| bfe (0.449573) | |
| ski (0.440205) | |
| ldo (0.38801) | |
| tra (0.369276) | |
| ill (0.351185) | |
| sin (0.349895) | |
| duo (0.345602) | |
| jca (0.34188) | |
| spc (0.340097) | |
| tbr (0.308356) | |
| cli (0.305623) | |
| eje (0.296501) | |
| fat (0.294855) | |
| che (0.272628) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ret (0.257467) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fco (0.157208) | |
| csk (0.140746) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jej (0.0989218) |