Non-Coding RNA Search

Ss1.1-rfat0111_d5.5

Sequence:


               
               CCACCAGGTTTGTGATGCACGAGCGCCAGAACGGCAGCAGCTACAGCACAGACAGGGACA
TCCAGTTTCTGCAGGACATTACCTGCCTGAGCTCCCCCACTCGCCTGGCCGTGGTGCCCT
GGGGAGAGCGCAAGGTGCTGAGATGGATCCGGAGAAACTATGGAGACGTGGATGTTTACA
TCACGGCCAGTGGCATCGACGACCAGTCTCTGGAAAATGATGAACTCCGAAAGTACTACT
TAGAGAAGTACATTCAGGAGGCTTTGAAAGGTGAGGTTCGGGGGCCATTTCGGATACAGT
GAAGTAGGACATTCCCAGCTACTATGAACAAAGGAATGAGGGGAACAGATACATTAGTGA
CAATGTCAGCTCATTATGGAAAATTTGGCAAGTACGGAAAAATATTTTTAAAATACCTGA
CATATAGCATGTCAGAGGAGAAAGGATCTGTGGAGAAAAAAAGAGCAGGGAAGGGGATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCAGGTTTGTGATGCACGAGCGCCAGAACGGCAGCAGCTACAGCACAGACAGGGACA
TCCAGTTTCTGCAGGACATTACCTGCCTGAGCTCCCCCACTCGCCTGGCCGTGGTGCCCT
GGGGAGAGCGCAAGGTGCTGAGATGGATCCGGAGAAACTATGGAGACGTGGATGTTTACA
TCACGGCCAGTGGCATCGACGACCAGTCTCTGGAAAATGATGAACTCCGAAAGTACTACT
TAGAGAAGTACATTCAGGAGGCTTTGAAAGGTGAGGTTCGGGGGCCATTTCGGATACAGT
GAAGTAGGACATTCCCAGCTACTATGAACAAAGGAATGAGGGGAACAGATACATTAGTGA
CAATGTCAGCTCATTATGGAAAATTTGGCAAGTACGGAAAAATATTTTTAAAATACCTGA
CATATAGCATGTCAGAGGAGAAAGGATCTGTGGAGAAAAAAAGAGCAGGGAAGGGGATGT

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-362, gnl|bosTau2|chr6 (30751392-30751032)
               

               
               1-362, gnl|canFam2|chr3 (75828037-75827446)
               

               
               1-362, gnl|danRer3|chr10 (28788064-28788651)
               

               
               1-362, gnl|dasNov1|scaffold_21814 (4090-4682)
               

               
               1-362, gnl|echTel1|scaffold_32997 (2423-1839)
               

               
               1-362, gnl|fr1|chrUn (155976158-155975524)
               

               
               1-362, gnl|galGal2|chrUn (16604473-16605054)
               

               
               1-362, gnl|hg17|chr4 (39271086-39271677)
               

               
               1-362, gnl|Hg17|chr4 (39271392-39271753)
               

               
               1-362, gnl|loxAfr1|scaffold_2611 (39559-38967)
               

               
               1-362, gnl|mm7|chr5 (64734307-64734889)
               

               
               1-362, gnl|monDom2|scaffold_26 (4547797-4548377)
               

               
               1-362, gnl|oryCun1|scaffold_77580 (1428-837)
               

               
               1-362, gnl|panTro1|chr3 (41962837-41963428)
               

               
               1-362, gnl|rheMac2|chr5 (34439894-34440485)
               

               
               1-362, gnl|rn3|chr12 (3735487-3734912)
               

               
               1-362, gnl|tetNig1|chr1 (306006-305384)
               

               
               1-362, gnl|xenTro1|scaffold_84 (2040044-2039477)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr6 (30751392-30751032)
               

               
               1-362, gnl|canFam2|chr3 (75828037-75827446)
               

               
               1-362, gnl|danRer3|chr10 (28788064-28788651)
               

               
               1-362, gnl|dasNov1|scaffold_21814 (4090-4682)
               

               
               1-362, gnl|echTel1|scaffold_32997 (2423-1839)
               

               
               1-362, gnl|fr1|chrUn (155976158-155975524)
               

               
               1-362, gnl|galGal2|chrUn (16604473-16605054)
               

               
               1-362, gnl|hg17|chr4 (39271086-39271677)
               

               
               1-362, gnl|Hg17|chr4 (39271392-39271753)
               

               
               1-362, gnl|loxAfr1|scaffold_2611 (39559-38967)
               

               
               1-362, gnl|mm7|chr5 (64734307-64734889)
               

               
               1-362, gnl|monDom2|scaffold_26 (4547797-4548377)
               

               
               1-362, gnl|oryCun1|scaffold_77580 (1428-837)
               

               
               1-362, gnl|panTro1|chr3 (41962837-41963428)
               

               
               1-362, gnl|rheMac2|chr5 (34439894-34440485)
               

               
               1-362, gnl|rn3|chr12 (3735487-3734912)
               

               
               1-362, gnl|tetNig1|chr1 (306006-305384)
               

               
               1-362, gnl|xenTro1|scaffold_84 (2040044-2039477)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fat (0.147427)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	1-362, gnl\|bosTau2\|chr6 (30751392-30751032)
	1-362, gnl\|canFam2\|chr3 (75828037-75827446)
	1-362, gnl\|danRer3\|chr10 (28788064-28788651)
	1-362, gnl\|dasNov1\|scaffold_21814 (4090-4682)
	1-362, gnl\|echTel1\|scaffold_32997 (2423-1839)
	1-362, gnl\|fr1\|chrUn (155976158-155975524)
	1-362, gnl\|galGal2\|chrUn (16604473-16605054)
	1-362, gnl\|hg17\|chr4 (39271086-39271677)
	1-362, gnl\|Hg17\|chr4 (39271392-39271753)
	1-362, gnl\|loxAfr1\|scaffold_2611 (39559-38967)
	1-362, gnl\|mm7\|chr5 (64734307-64734889)
	1-362, gnl\|monDom2\|scaffold_26 (4547797-4548377)
	1-362, gnl\|oryCun1\|scaffold_77580 (1428-837)
	1-362, gnl\|panTro1\|chr3 (41962837-41963428)
	1-362, gnl\|rheMac2\|chr5 (34439894-34440485)
	1-362, gnl\|rn3\|chr12 (3735487-3734912)
	1-362, gnl\|tetNig1\|chr1 (306006-305384)
	1-362, gnl\|xenTro1\|scaffold_84 (2040044-2039477)