Ss1.1-rfat0113_j9.5
|
TGTGGTGTAGGGCAAAGACATGGCTCGGATCCCGCGTTGCTGTGGCTGTGGTGTAAGCCG
GCAGCTACAGCTCCAGTTAGACCCCTCGCCTGGGAACTTCTATATGCCACGGGTACAGCC
CTAAAAAGATAAAAAGACAAAAAATAATAATAATACAATAAAAGTTTAAAAATATGCTGA
GGTCCATATCCAGTGAGATGTCAAAAAATCATTACAGGATATAGCTAAAACCCAGATTAA
TTCTCTTTTTAGGTTTTTTTTATAGTGAAATTTCATAGTAATATAAAAAGAGATTATCTT
GTCTCAGCTGCGCCCACAATAGAGAAAGAGTTAAAATCCGTTTTTCTGCAGTGAATATGA
GTATGTGCAAGAAAGGGGAGGAAATACACATGCAGATTTTATTTCTCACTAACAACATTT
ATTGACCACTTTGGCAAAGACACTGTGGTAGATATTGCAGAAGTTCAAAGGAGAACCAAG
CACTGGCCTGGCCTTGAGAGAGCTGAAGTCTTTCTCCTTGACCATTCTAGAATATTGCCA
AATGAAAGAAAAAGAAATGTATGATAATTCTGTCAAACACATTTTCATTCTGTATTAAGC
AGAGTTAATTAGGAATTGAGCATCTTTGGTAGGAATGTTTTGCTTTTTCTTTTATTTCTT
TTTTTTTTTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGTGGTGTAGGGCAAAGACATGGCTCGGATCCCGCGTTGCTGTGGCTGTGGTGTAAGCCG
GCAGCTACAGCTCCAGTTAGACCCCTCGCCTGGGAACTTCTATATGCCACGGGTACAGCC
CTAAAAAGATAAAAAGACAAAAAATAATAATAATACAATAAAAGTTTAAAAATATGCTGA
GGTCCATATCCAGTGAGATGTCAAAAAATCATTACAGGATATAGCTAAAACCCAGATTAA
TTCTCTTTTTAGGTTTTTTTTATAGTGAAATTTCATAGTAATATAAAAAGAGATTATCTT
GTCTCAGCTGCGCCCACAATAGAGAAAGAGTTAAAATCCGTTTTTCTGCAGTGAATATGA
GTATGTGCAAGAAAGGGGAGGAAATACACATGCAGATTTTATTTCTCACTAACAACATTT
ATTGACCACTTTGGCAAAGACACTGTGGTAGATATTGCAGAAGTTCAAAGGAGAACCAAG
CACTGGCCTGGCCTTGAGAGAGCTGAAGTCTTTCTCCTTGACCATTCTAGAATATTGCCA
AATGAAAGAAAAAGAAATGTATGATAATTCTGTCAAACACATTTTCATTCTGTATTAAGC
AGAGTTAATTAGGAATTGAGCATCTTTGGTAGGAATGTTTTGCTTTTTCTTTTATTTCTT
TTTTTTTTTTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
159-664, gnl|bosTau2|chr1 (42991943-42991444) |
|
159-664, gnl|canFam2|chr33 (32902375-32901901) |
|
159-664, gnl|dasNov1|scaffold_166383 (3470-3968) |
|
159-664, gnl|echTel1|scaffold_79968 (3934-3511) |
|
159-664, gnl|hg17|chr15 (19186069-19186523) |
|
159-664, gnl|Hg17|chr3 (198046945-198047482) |
|
159-664, gnl|loxAfr1|scaffold_5167 (20053-20404) |
|
159-664, gnl|mm7|chr16 (31690978-31691398) |
|
159-664, gnl|monDom2|scaffold_24 (26662119-26661653) |
|
159-664, gnl|oryCun1|scaffold_98468 (7000-7454) |
|
159-664, gnl|panTro1|chr2 (202231993-202231504) |
|
159-664, gnl|rheMac2|chr2 (188595425-188595866) |
|
159-664, gnl|rn3|chr11 (70649725-70649287) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
159-664, gnl|bosTau2|chr1 (42991943-42991444) |
|
159-664, gnl|canFam2|chr33 (32902375-32901901) |
|
159-664, gnl|dasNov1|scaffold_166383 (3470-3968) |
|
159-664, gnl|echTel1|scaffold_79968 (3934-3511) |
|
159-664, gnl|hg17|chr15 (19186069-19186523) |
|
159-664, gnl|Hg17|chr3 (198046945-198047482) |
|
159-664, gnl|loxAfr1|scaffold_5167 (20053-20404) |
|
159-664, gnl|mm7|chr16 (31690978-31691398) |
|
159-664, gnl|monDom2|scaffold_24 (26662119-26661653) |
|
159-664, gnl|oryCun1|scaffold_98468 (7000-7454) |
|
159-664, gnl|panTro1|chr2 (202231993-202231504) |
|
159-664, gnl|rheMac2|chr2 (188595425-188595866) |
|
159-664, gnl|rn3|chr11 (70649725-70649287) |
|
fat (0.442282) |
|
pan (0.23596) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
eye (0.170503) |
|
cki (0.165235) |
|
thg (0.126791) |
|
cty (0.10408) |
|
fat (0.442282) |
|
pan (0.23596) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
eye (0.170503) |
|
cki (0.165235) |
|
thg (0.126791) |
|
cty (0.10408) |
