Non-Coding RNA Search

Ss1.1-rfat0113_l5.5

Sequence:


               
               TTTTTTTTTTTTTTTAAATAACAGAATACTCGTGTACTGCTGTTCTATCACTGTATGCAC
TCATTGGGTCTAAGGGAGATGTCTGAAATCCTTCACTTAAATTATTTTATGATACTACTG
TTTTCTCTATTTTTGAGGTTTTTTAATTATTATTTTTTAATCTTTTGAAGGGAAGATTAA
TATAAGCATTCGTTTAATGCAAGAAAACTCAGCCCTTGGATATATAACCATGTAATTCAA
TATGAGCATTTAGAGTTCTGCGTGGTTGACAGATACCTAGTTCTTTACTAAAAGTAAACC
CATCTCTACACATATTTCAAAACTGAATTTGAAACCTATAAAAGACCAACTGACTTTTTA
GTTGTAATGAACCATAAGTGATTTTGCACGGTTGACACACCTGTGTGTACTGTAGGAGGC
CAGGACTTGGCAGAGGAAATATTCTCGGTTTACTGGTATATATATATAAATGGTAGTTTG
CTTTGTTTATATATTCCACTCTCAAAAAAAAATCAGCATTTTTCTAAACAATGATTTTAC
AAAAACCATCATTTACATATTTGTATAAGAAACTTAATACAATTTTAATCAAAATTTTAA
GTAATTTCAAAAATGCTTTAAGATGCTATATTTCTGGAGTACCTATGAAGTGGATGACTA
CATCATGTTAAATATTTATTTTCTTTTTTGATTTTGGAATAGCAGTTTTATTTTAAATAA
AATTCCACTTATTTTTAAGAAATTCAGGGAAGATTTGGTCCCACTGAAGATGCAGTATTT
TTGTAGTATTTATAAGCTGTCCTAAATGATAGACTATAGAAAGCATTTTTGCTGTATGAA
GGTAAGCCAGCCCATTCTATAGGTCGTTTAAACTCGAAACGTTTCACCCACTGGGTTTTG
ATTTGTGAAGTGGCATGGAATCTACCTTTGCACTGAATATCTTTTCATTCATATCTCCTC
TGCCTTAGTCACAGTGGCAACAGTACAGAAAATTCTATCAAACCTCAGAATATAGTAGAA
ATAATTAAGCTGTTGAATGAGTCTTAAAAAATCATACTACTGTTAAGTGGACCAAGTTTG
GTGAAGCAGAATGAGACAGAGGTTGATTAAGGAAGGAACAACTCAAGGATATTGGGAACG
ATAACTTTTCCACTTGAGAACTACTTTTATGTTTTACTGTAATTTTAAAAAAAGATTTTT
TTTTCTGTTTGTTATTTTGCAAAAGAAAATAGTATTTACAGGTGGCTTCTTTTAAAATAT
AAAATATAAAGCAGGAATGTATATGAAATGTCAGATTTTATTGTATTTGCAGAGTATTAG
CTTTGAAATTGAATAAAGAAAGCTGTTTGTAGTTTTAAAATGGCTTATTGGTATCAATTA
GAAATTTCTTCTATTTTTTGATGTACTTAGAGCTTTTTGAGTATAGAATTTTAAATGGCA
GGATTTTACAGTGTTTACATGCAAGTGCATTTTATAAGTGTTCTATATGTGTAAAATAGT
ATTTTCAACTGGAAAGTCTTGGCTAGTGCAGAAGGCCTGGCCTTTTTCTGGTTCCCATGA
TGTTGCCTACACTGCTAGACTACAGTTTAGTATTGCTTTGTATCATGAGGCCAAGAAATT
CCCTGTTGTTTGTAAATAGAATAATTGAAAAAGCAATAAACATTTATTGAACAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTAAATAACAGAATACTCGTGTACTGCTGTTCTATCACTGTATGCAC
TCATTGGGTCTAAGGGAGATGTCTGAAATCCTTCACTTAAATTATTTTATGATACTACTG
TTTTCTCTATTTTTGAGGTTTTTTAATTATTATTTTTTAATCTTTTGAAGGGAAGATTAA
TATAAGCATTCGTTTAATGCAAGAAAACTCAGCCCTTGGATATATAACCATGTAATTCAA
TATGAGCATTTAGAGTTCTGCGTGGTTGACAGATACCTAGTTCTTTACTAAAAGTAAACC
CATCTCTACACATATTTCAAAACTGAATTTGAAACCTATAAAAGACCAACTGACTTTTTA
GTTGTAATGAACCATAAGTGATTTTGCACGGTTGACACACCTGTGTGTACTGTAGGAGGC
CAGGACTTGGCAGAGGAAATATTCTCGGTTTACTGGTATATATATATAAATGGTAGTTTG
CTTTGTTTATATATTCCACTCTCAAAAAAAAATCAGCATTTTTCTAAACAATGATTTTAC
AAAAACCATCATTTACATATTTGTATAAGAAACTTAATACAATTTTAATCAAAATTTTAA
GTAATTTCAAAAATGCTTTAAGATGCTATATTTCTGGAGTACCTATGAAGTGGATGACTA
CATCATGTTAAATATTTATTTTCTTTTTTGATTTTGGAATAGCAGTTTTATTTTAAATAA
AATTCCACTTATTTTTAAGAAATTCAGGGAAGATTTGGTCCCACTGAAGATGCAGTATTT
TTGTAGTATTTATAAGCTGTCCTAAATGATAGACTATAGAAAGCATTTTTGCTGTATGAA
GGTAAGCCAGCCCATTCTATAGGTCGTTTAAACTCGAAACGTTTCACCCACTGGGTTTTG
ATTTGTGAAGTGGCATGGAATCTACCTTTGCACTGAATATCTTTTCATTCATATCTCCTC
TGCCTTAGTCACAGTGGCAACAGTACAGAAAATTCTATCAAACCTCAGAATATAGTAGAA
ATAATTAAGCTGTTGAATGAGTCTTAAAAAATCATACTACTGTTAAGTGGACCAAGTTTG
GTGAAGCAGAATGAGACAGAGGTTGATTAAGGAAGGAACAACTCAAGGATATTGGGAACG
ATAACTTTTCCACTTGAGAACTACTTTTATGTTTTACTGTAATTTTAAAAAAAGATTTTT
TTTTCTGTTTGTTATTTTGCAAAAGAAAATAGTATTTACAGGTGGCTTCTTTTAAAATAT
AAAATATAAAGCAGGAATGTATATGAAATGTCAGATTTTATTGTATTTGCAGAGTATTAG
CTTTGAAATTGAATAAAGAAAGCTGTTTGTAGTTTTAAAATGGCTTATTGGTATCAATTA
GAAATTTCTTCTATTTTTTGATGTACTTAGAGCTTTTTGAGTATAGAATTTTAAATGGCA
GGATTTTACAGTGTTTACATGCAAGTGCATTTTATAAGTGTTCTATATGTGTAAAATAGT
ATTTTCAACTGGAAAGTCTTGGCTAGTGCAGAAGGCCTGGCCTTTTTCTGGTTCCCATGA
TGTTGCCTACACTGCTAGACTACAGTTTAGTATTGCTTTGTATCATGAGGCCAAGAAATT
CCCTGTTGTTTGTAAATAGAATAATTGAAAAAGCAATAAACATTTATTGAACAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               122-222, + strand, RNAz p=0.96271
               

               
               1441-1599, - strand, RNAz p=0.659618

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-222, + strand, RNAz p=0.96271
               

               
               1441-1599, - strand, RNAz p=0.659618

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1680, gnl|bosTau2|chr9 (61800864-61799186)
               

               
               3-1680, gnl|Hg17|chr6 (163959951-163961588)
               

               
               3-1680, gnl|Mm7|chr17 (8930428-8928902)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1680, gnl|bosTau2|chr9 (61800864-61799186)
               

               
               3-1680, gnl|Hg17|chr6 (163959951-163961588)
               

               
               3-1680, gnl|Mm7|chr17 (8930428-8928902)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

Help | Less info


               
               spc (2.15395)
               

               
               vin (1.66279)
               

               
               hyp (1.28553)
               

               
               fhi (1.01747)
               

               
               fco (0.78604)
               

               
               fat (0.737137)
               

               
               liv (0.731422)
               

               
               cbe (0.717703)
               

               
               isp (0.601504)
               

               
               ski (0.586941)
               

               
               fbs (0.526039)
               

               
               kid (0.389206)
               

               
               ebs (0.354904)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (2.15395)
               

               
               vin (1.66279)
               

               
               hyp (1.28553)
               

               
               fhi (1.01747)
               

               
               fco (0.78604)
               

               
               fat (0.737137)
               

               
               liv (0.731422)
               

               
               cbe (0.717703)
               

               
               isp (0.601504)
               

               
               ski (0.586941)
               

               
               fbs (0.526039)
               

               
               kid (0.389206)
               

               
               ebs (0.354904)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	122-222, + strand, RNAz p=0.96271
	1441-1599, - strand, RNAz p=0.659618

	3-1680, gnl\|bosTau2\|chr9 (61800864-61799186)
	3-1680, gnl\|Hg17\|chr6 (163959951-163961588)
	3-1680, gnl\|Mm7\|chr17 (8930428-8928902)

	spc (2.15395)
	vin (1.66279)
	hyp (1.28553)
	fhi (1.01747)
	fco (0.78604)
	fat (0.737137)
	liv (0.731422)
	cbe (0.717703)
	isp (0.601504)
	ski (0.586941)
	fbs (0.526039)
	kid (0.389206)
	ebs (0.354904)
	fce (0.271592)
	ssp (0.271039)
	ova (0.258264)
	ret (0.257467)
	thg (0.253582)
	hea (0.204499)
	fli (0.202881)
	aor (0.195274)
	ldo (0.194005)
	sag (0.182715)
	gul (0.177588)
	mga (0.160205)
	tbr (0.154178)
	ctl (0.153069)
	lin (0.145603)
	ste (0.135208)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	jca (0.11396)
	nbm (0.0993246)