Non-Coding RNA Search

Ss1.1-rfat0114_p18.5

Sequence:


               
               TGGGCCTATCTAGAAGTGGATAAGTCTGTATATGTATATCACACACATACAACCTCCATG
TCCTTGGGTCCTGGGTTTTTGAAGAAGTGCTAAAACATATAAATAGAATAAATCTTGCTG
TGGAATACCATGCTTTAGAACAAATCCTTTTTGATCCTGACGCTTCTGAAAACTAGGTCT
GACTCTGTGGGAATTTTTCCCAGCTAAAGAAAAATCACTTCCGTTATCCTCCATCTGCAC
CCCCAGTTTGGCTGTTGAGCATTTCACACATCCCTGATATCCTGTACATTGTGATCCAAA
GTTACTACAAGTAGGTTTAAGAGAATTTTTATCTATGACTTTGGAAACAATATTCCATTG
CAGATTATTAATAAATAATTTCATTGCTTAGCTAACCAACCTTTTTTTTTTAAGGAAGAC
ATTTGAAAAGTTAACAGAACAATGAAATAACAAAGATAGTTTAACAGAGAAACTTATTCT
GGATTGCATTTGTTCATTTGTGTAATATGTGAATTTTTTTTAATGTCCCTTTTAGTATTC
AATGGAGATTTGGATCCTGAAAAAGACAAAGGGTTAGAGTTAATGTCCTGTAGATAACAC
ACACAGAGACAGGCCATATATTTACTAGAAGCAGCTTTATGTCTAGTTTGTGTCTTTCGT
TTTAATAATTCCTGAGAGATGTCTCTGGAAGGAAAAGTGTTTTGAAAACTAATGGCTATT
TTTAAGGACAAAAATTACAACGTAAGCTAATTTCTTAAATACAGTAGAATAACTTTCAGG
ACAATGTTGCCTCACAACCCTGCTCACATCGAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCCTATCTAGAAGTGGATAAGTCTGTATATGTATATCACACACATACAACCTCCATG
TCCTTGGGTCCTGGGTTTTTGAAGAAGTGCTAAAACATATAAATAGAATAAATCTTGCTG
TGGAATACCATGCTTTAGAACAAATCCTTTTTGATCCTGACGCTTCTGAAAACTAGGTCT
GACTCTGTGGGAATTTTTCCCAGCTAAAGAAAAATCACTTCCGTTATCCTCCATCTGCAC
CCCCAGTTTGGCTGTTGAGCATTTCACACATCCCTGATATCCTGTACATTGTGATCCAAA
GTTACTACAAGTAGGTTTAAGAGAATTTTTATCTATGACTTTGGAAACAATATTCCATTG
CAGATTATTAATAAATAATTTCATTGCTTAGCTAACCAACCTTTTTTTTTTAAGGAAGAC
ATTTGAAAAGTTAACAGAACAATGAAATAACAAAGATAGTTTAACAGAGAAACTTATTCT
GGATTGCATTTGTTCATTTGTGTAATATGTGAATTTTTTTTAATGTCCCTTTTAGTATTC
AATGGAGATTTGGATCCTGAAAAAGACAAAGGGTTAGAGTTAATGTCCTGTAGATAACAC
ACACAGAGACAGGCCATATATTTACTAGAAGCAGCTTTATGTCTAGTTTGTGTCTTTCGT
TTTAATAATTCCTGAGAGATGTCTCTGGAAGGAAAAGTGTTTTGAAAACTAATGGCTATT
TTTAAGGACAAAAATTACAACGTAAGCTAATTTCTTAAATACAGTAGAATAACTTTCAGG
ACAATGTTGCCTCACAACCCTGCTCACATCGAGAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-816, gnl|bosTau2|chr19 (18146706-18147527)
               

               
               3-816, gnl|Hg17|chr17 (2532962-2533782)
               

               
               3-816, gnl|Mm7|chr11 (74758151-74757358)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-816, gnl|bosTau2|chr19 (18146706-18147527)
               

               
               3-816, gnl|Hg17|chr17 (2532962-2533782)
               

               
               3-816, gnl|Mm7|chr11 (74758151-74757358)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               eye (0.170503)
               

               
               fat (0.147427)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	3-816, gnl\|bosTau2\|chr19 (18146706-18147527)
	3-816, gnl\|Hg17\|chr17 (2532962-2533782)
	3-816, gnl\|Mm7\|chr11 (74758151-74757358)

	eye (0.170503)
	fat (0.147427)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)