Non-Coding RNA Search

Ss1.1-rfat0116_n12.5

Sequence:


               
               TAATTTACTCCGCCGCATGCGTCACTAAGGGGACACTGAGTAAGGCCTTTGTGTTGTTAC
CACAAGTCATGGCCTGACGTGATCTCAAAATGAACAATTTCACATATAGCCAGTCTGACA
ACAAAGTGTATATATTTTATACAAATACCTGCTACATATATATGTACATGTACATATATA
TACATTAGATGAAATATAATATATATAATGGCTTCAGACCATAGGCACAGTGGCTGTATA
GTTCCCCAAATTTTAGTTTTTAAAGATGTACATGGAGGCACACACGAACGTACACAAATG
ATTTGACTTATTTTGGATGGAAATATATTTTGGAAGACAGAAATAGATGGAGTAGCAAAA
TAATTTAAAGGACTTCTCTTTTAAGAGTCAACCAGAAGATTGCATTTTATTAGGTTAAAA
AATGCCCCATGAGTCACATGTCTGTAAATTAAGCCCATGGCGTCCTTATTACCATATGCC
AATCAATACTTTCCTTGCCTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTTACTCCGCCGCATGCGTCACTAAGGGGACACTGAGTAAGGCCTTTGTGTTGTTAC
CACAAGTCATGGCCTGACGTGATCTCAAAATGAACAATTTCACATATAGCCAGTCTGACA
ACAAAGTGTATATATTTTATACAAATACCTGCTACATATATATGTACATGTACATATATA
TACATTAGATGAAATATAATATATATAATGGCTTCAGACCATAGGCACAGTGGCTGTATA
GTTCCCCAAATTTTAGTTTTTAAAGATGTACATGGAGGCACACACGAACGTACACAAATG
ATTTGACTTATTTTGGATGGAAATATATTTTGGAAGACAGAAATAGATGGAGTAGCAAAA
TAATTTAAAGGACTTCTCTTTTAAGAGTCAACCAGAAGATTGCATTTTATTAGGTTAAAA
AATGCCCCATGAGTCACATGTCTGTAAATTAAGCCCATGGCGTCCTTATTACCATATGCC
AATCAATACTTTCCTTGCCTTCTG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-504, gnl|bosTau2|chr13 (20151484-20151983)
               

               
               1-504, gnl|canFam2|chr2 (23143872-23143048)
               

               
               1-504, gnl|dasNov1|scaffold_46257 (9910-9247)
               

               
               1-504, gnl|hg17|chr10 (16595062-16595852)
               

               
               1-504, gnl|Hg17|chr10 (16595646-16595107)
               

               
               1-504, gnl|loxAfr1|scaffold_3057 (69744-69054)
               

               
               1-504, gnl|mm7|chr2 (12941979-12942722)
               

               
               1-504, gnl|Mm7|chr2 (12942515-12942023)
               

               
               1-504, gnl|monDom2|scaffold_7 (53098767-53098021)
               

               
               1-504, gnl|oryCun1|scaffold_184156 (258324-259069)
               

               
               1-504, gnl|panTro1|chr8 (17094238-17095028)
               

               
               1-504, gnl|rheMac2|chr9 (16788016-16788800)
               

               
               1-504, gnl|rn3|chr17 (87287402-87288151)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr13 (20151484-20151983)
               

               
               1-504, gnl|canFam2|chr2 (23143872-23143048)
               

               
               1-504, gnl|dasNov1|scaffold_46257 (9910-9247)
               

               
               1-504, gnl|hg17|chr10 (16595062-16595852)
               

               
               1-504, gnl|Hg17|chr10 (16595646-16595107)
               

               
               1-504, gnl|loxAfr1|scaffold_3057 (69744-69054)
               

               
               1-504, gnl|mm7|chr2 (12941979-12942722)
               

               
               1-504, gnl|Mm7|chr2 (12942515-12942023)
               

               
               1-504, gnl|monDom2|scaffold_7 (53098767-53098021)
               

               
               1-504, gnl|oryCun1|scaffold_184156 (258324-259069)
               

               
               1-504, gnl|panTro1|chr8 (17094238-17095028)
               

               
               1-504, gnl|rheMac2|chr9 (16788016-16788800)
               

               
               1-504, gnl|rn3|chr17 (87287402-87288151)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               fat (0.147427)

	1-504, gnl\|bosTau2\|chr13 (20151484-20151983)
	1-504, gnl\|canFam2\|chr2 (23143872-23143048)
	1-504, gnl\|dasNov1\|scaffold_46257 (9910-9247)
	1-504, gnl\|hg17\|chr10 (16595062-16595852)
	1-504, gnl\|Hg17\|chr10 (16595646-16595107)
	1-504, gnl\|loxAfr1\|scaffold_3057 (69744-69054)
	1-504, gnl\|mm7\|chr2 (12941979-12942722)
	1-504, gnl\|Mm7\|chr2 (12942515-12942023)
	1-504, gnl\|monDom2\|scaffold_7 (53098767-53098021)
	1-504, gnl\|oryCun1\|scaffold_184156 (258324-259069)
	1-504, gnl\|panTro1\|chr8 (17094238-17095028)
	1-504, gnl\|rheMac2\|chr9 (16788016-16788800)
	1-504, gnl\|rn3\|chr17 (87287402-87288151)