Non-Coding RNA Search

Ss1.1-rfat0117_c24.5

Sequence:


               
               ACAGGTACAGCCATTTAAAAAAAAAAAAAAAAAAAAAAGATTAACCATCCCCAAAGAATC
TTTGCTCCTGAAAAATAGACACCTATCTCTTCAATAGCTTCTCATACTATGTGGAATGTG
ACCCTAGCGTGTTGATTAAAGCCGTGTTTGTTGTGTGTCAGACCTAGAGGCCACATCTGT
GAATCTGGATTCTGGCTAAGTGAGATTCCATGCTCGCACTGGTGTCAAGTTACAAAAGCC
AAGGTGCTTGCTATAAATATCAACCTGGAAGAAATACTAATAGCCACCATTTCTTAAGTG
CCTACTGTGTGCCAGGCTCTGAACTTGGTGCTTCATATACATTATTCTAAATTCTTACAA
TGAATAAGGCAGGTGTTTTTAATTCCCATTTTATAGAACCCCAAACTAAGTTTTTAAGTG
GCACGCCGAAAGCCATGTGGCTAGTCTGAGACACCGTTTGATCTGGGGTCCCTCTGTGCT
TTTTCTGCTACGCCACACAACCTCTACTCATATCAAAAATTTTCAAAGTGCAAATATATT
CAGATTTACTCCAGGCTACCAAAAGCTTTCACAAGAATATCTCATTAGCAGATGAAGTGT
TTTATCCCTGACACCATCTCTCAGTGGTGAAGTGAATCATATTTCTGTAGGATGTGGAAA
TTTTGCCAGTGCCGTATTTGGTCTAGTGACAGATTTTTATGGGTACTTTTTGATGATGTA
AAAAAGCATATGCATATGTTTTCCAGATTGTTATTTTAGGAAAACCTGAAGGTTTCTATA
ACACATTGTTTCAGTGTTAGCATATAAAACAATCAAGATTGCATTTGAAGTATTTCCTTC
CTGGTGGGTTAATGTGAAAAGATAGGTTGATTGACTCCTACAACTCTATCAACTCTGATC
ATCTCCAGGACCTGGTTATGGTTGAAACATTCCACGTCGATTCCTGGGAAGGAAGCTATC
TGGCTTGGCTTCTCAGTGTCTGGCGCAAGTTGGTGTACTGTGAAGGGGCATTAGTCATTG
TGTTGTGTAGACAGTTGTGTTGCTACCAAGTTTCACACCAAATATTTGGAAGAATGGTAT
TGAATCTAAAGCCAAATCTTAGTTTTTATTAAATTCGTGGAAAGGCTAATATATTCCAAC
ATAATTATTACATATAATTAAGTGATCACATCTTAATTTATTTTAATGTACATATGTTAC
TATTCTGAGCCACATTCTAAAGAAAAAATAAATGTCTTTCCTTGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGTACAGCCATTTAAAAAAAAAAAAAAAAAAAAAAGATTAACCATCCCCAAAGAATC
TTTGCTCCTGAAAAATAGACACCTATCTCTTCAATAGCTTCTCATACTATGTGGAATGTG
ACCCTAGCGTGTTGATTAAAGCCGTGTTTGTTGTGTGTCAGACCTAGAGGCCACATCTGT
GAATCTGGATTCTGGCTAAGTGAGATTCCATGCTCGCACTGGTGTCAAGTTACAAAAGCC
AAGGTGCTTGCTATAAATATCAACCTGGAAGAAATACTAATAGCCACCATTTCTTAAGTG
CCTACTGTGTGCCAGGCTCTGAACTTGGTGCTTCATATACATTATTCTAAATTCTTACAA
TGAATAAGGCAGGTGTTTTTAATTCCCATTTTATAGAACCCCAAACTAAGTTTTTAAGTG
GCACGCCGAAAGCCATGTGGCTAGTCTGAGACACCGTTTGATCTGGGGTCCCTCTGTGCT
TTTTCTGCTACGCCACACAACCTCTACTCATATCAAAAATTTTCAAAGTGCAAATATATT
CAGATTTACTCCAGGCTACCAAAAGCTTTCACAAGAATATCTCATTAGCAGATGAAGTGT
TTTATCCCTGACACCATCTCTCAGTGGTGAAGTGAATCATATTTCTGTAGGATGTGGAAA
TTTTGCCAGTGCCGTATTTGGTCTAGTGACAGATTTTTATGGGTACTTTTTGATGATGTA
AAAAAGCATATGCATATGTTTTCCAGATTGTTATTTTAGGAAAACCTGAAGGTTTCTATA
ACACATTGTTTCAGTGTTAGCATATAAAACAATCAAGATTGCATTTGAAGTATTTCCTTC
CTGGTGGGTTAATGTGAAAAGATAGGTTGATTGACTCCTACAACTCTATCAACTCTGATC
ATCTCCAGGACCTGGTTATGGTTGAAACATTCCACGTCGATTCCTGGGAAGGAAGCTATC
TGGCTTGGCTTCTCAGTGTCTGGCGCAAGTTGGTGTACTGTGAAGGGGCATTAGTCATTG
TGTTGTGTAGACAGTTGTGTTGCTACCAAGTTTCACACCAAATATTTGGAAGAATGGTAT
TGAATCTAAAGCCAAATCTTAGTTTTTATTAAATTCGTGGAAAGGCTAATATATTCCAAC
ATAATTATTACATATAATTAAGTGATCACATCTTAATTTATTTTAATGTACATATGTTAC
TATTCTGAGCCACATTCTAAAGAAAAAATAAATGTCTTTCCTTGTGGA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               163-1011, gnl|bosTau2|chr8 (31956134-31955274)
               

               
               163-1011, gnl|Hg17|chr9 (36205830-36204711)
               


               
               1029-1248, gnl|bosTau2|chr8 (31955233-31955011)
               

               
               1029-1248, gnl|Hg17|chr9 (36204664-36204440)
               

               
               1029-1248, gnl|Mm7|chr4 (44048266-44048062)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-1011, gnl|bosTau2|chr8 (31956134-31955274)
               

               
               163-1011, gnl|Hg17|chr9 (36205830-36204711)
               


               
               1029-1248, gnl|bosTau2|chr8 (31955233-31955011)
               

               
               1029-1248, gnl|Hg17|chr9 (36204664-36204440)
               

               
               1029-1248, gnl|Mm7|chr4 (44048266-44048062)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               thg (0.126791)

	163-1011, gnl\|bosTau2\|chr8 (31956134-31955274)
	163-1011, gnl\|Hg17\|chr9 (36205830-36204711)

	1029-1248, gnl\|bosTau2\|chr8 (31955233-31955011)
	1029-1248, gnl\|Hg17\|chr9 (36204664-36204440)
	1029-1248, gnl\|Mm7\|chr4 (44048266-44048062)

	elu (0.385356)
	pty (0.285429)
	lyg (0.266205)
	rec (0.17307)
	cli (0.152812)
	fat (0.147427)
	csk (0.140746)
	thg (0.126791)