Non-Coding RNA Search

Ss1.1-rfat0117_d11.5

Sequence:


               
               CTGTTTGTGACAAAAAAAGCTGCCTATGAAAGTCTAATTTTAGATGGGCTTTTTATGGAA
ATTCTCAATGACTGTTCTGATGTGGATGAGATCAAATTCCAAGAAGATGGTTCTTGGTGT
CCAATGAGACCGAAGAAGGAAGCTATGAAAGTATCCAGCCAACCGTGTACAAAAATAGAA
ACTTCAAGTGTCCTCAGCAAACCTTGTTCAGTGACTGTAGCCAATGAGGCAAGCAAGAAG
AAAGTGGATGTTATTGACCTTACAGTAGAAAGCTCTTCTGATGAAGAGGAAGACCCTCCT
GCCAAAAGGAAATGCATCTTTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTC
ATGTATCAGCCATCTTCTGTAAGGGTGCCCAGTGTGACTTCGGTTGATCCTGCTGCTATT
CCGCCTTCATTAACAGACTACTCAGTACCATTCCACCACACGCCAATATCAAGCATGTCA
TCAGATTTGCCAGGAGGACGAAGAAGAAATGATATTAATAATGAACTGCAGCTCGGATCA
TCTTCTGATACTGTTCAACAGTGAATGCAAAATAAAACAGATAATTTGTATTTATGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTTGTGACAAAAAAAGCTGCCTATGAAAGTCTAATTTTAGATGGGCTTTTTATGGAA
ATTCTCAATGACTGTTCTGATGTGGATGAGATCAAATTCCAAGAAGATGGTTCTTGGTGT
CCAATGAGACCGAAGAAGGAAGCTATGAAAGTATCCAGCCAACCGTGTACAAAAATAGAA
ACTTCAAGTGTCCTCAGCAAACCTTGTTCAGTGACTGTAGCCAATGAGGCAAGCAAGAAG
AAAGTGGATGTTATTGACCTTACAGTAGAAAGCTCTTCTGATGAAGAGGAAGACCCTCCT
GCCAAAAGGAAATGCATCTTTATGTCAGAAACACAAAGCAGCCCAACCAAAGGGGTTCTC
ATGTATCAGCCATCTTCTGTAAGGGTGCCCAGTGTGACTTCGGTTGATCCTGCTGCTATT
CCGCCTTCATTAACAGACTACTCAGTACCATTCCACCACACGCCAATATCAAGCATGTCA
TCAGATTTGCCAGGAGGACGAAGAAGAAATGATATTAATAATGAACTGCAGCTCGGATCA
TCTTCTGATACTGTTCAACAGTGAATGCAAAATAAAACAGATAATTTGTATTTATGGAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61886241|ref|XP_612798.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61886241|ref|XP_612798.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               229-341, - strand, RNAz p=0.729129

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-341, - strand, RNAz p=0.729129

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-494, gnl|bosTau2|chr16 (40859522-40859025)
               

               
               1-494, gnl|Hg17|chr18 (42670363-42654893)
               

               
               1-494, gnl|Mm7|chr18 (77415036-77431891)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-494, gnl|bosTau2|chr16 (40859522-40859025)
               

               
               1-494, gnl|Hg17|chr18 (42670363-42654893)
               

               
               1-494, gnl|Mm7|chr18 (77415036-77431891)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fat (0.147427)

	1-494, gnl\|bosTau2\|chr16 (40859522-40859025)
	1-494, gnl\|Hg17\|chr18 (42670363-42654893)
	1-494, gnl\|Mm7\|chr18 (77415036-77431891)