Non-Coding RNA Search

Ss1.1-rfat0117_o5.5

Sequence:


               
               AATTTTATATAAATAGCTGTTATATTCAGTCAGCTTTATAAAAATTCGTGGCTAAATAAT
CCAGGTAATTTCATCCTATGGCTGTTAATTTTTTTCATGAACATACATTTGATAATGCAG
GAGGATGTTAACTGAGCCATAAAAGATAAACACACTGTATATCACTTAGGTTGAATAAGG
GTGATGATATGATTCAGCAGCATGGAATTTGTATAGGTGGTTGAATTACTGTACTAGTCT
GAGGTCAGTTATAATTTTCCTTATTTGGAGACTCATAGTTGAGGTGAAACTTGTTTAAAA
ATGGCTTGTGATTCATATAAGTTTTGCCAAATGATACTTTGTATCAAAACTCTTTATATT
CTCTAACTCGTCCTTTTGCAGAGGTGTTCCTATGGAGGAGGTGTCTCTATGACCAAACGT
ATTTGGCAAAGTCTTACGTTCCTCTGGGAGCTTAGTAAAGCCGAAGGTACCTTAAATCTT
GTTTAATTTTATTTAACCCAATTCTTTCCAAACTTTTTTGACCACAGAACCCTTTCTCTT
AAGAAAACTAATGTTCCACGCCAAATCAACCCAATTGTCTGACAGTTCTTTTGCATTTTA
CATCAGATGGATAAATTTATATACACATTAACCATACAGAATATTTTACTAGAATTTTTT
ACTAGAATTTTTATACTGAAATGCAATTCACATTTTTGATGCTTTTAAAATAACTGATGT
AAACAGACATCCATTACCAAAGTAAAAATTAAATAATTTTATAATGAATATGACTAGGAT
ATGAATATAGTGTGGGAGTTTGTACTGGTTAACCCATGCCCCAGTTTTCTTATGATGATG
TAAATTATGGAAAAATGTACACTCTTAATGTCTAAGTGCTTTTATTTATACAGTAAACAT
GTTTCTGTGTCATTTTGAGAATTTTTAGTAAACATTCAAATAGCTTGCTATAAAGTTTTG
CATCATACAAAATCTGTTAACATATATATTATGAGATGCTTCAGTTCAAATAACAGTGCA
GTGATTCACCCATGCCTAAAAGACTGCCAAACAATTAATGTCAGGTGTTGCACTTCTACT
TCGAGTGGCAGTTTACATATTTTAAATTACATCAAGGGGACATCAATACTATTGGAAACT
TAATTTGGTCCACTTTAAATGTAATTTCAAAGACTGTGCTTGTATGATCCATGTAAGCAT
GCATTCAGAAACAAAAAGTAGTTTAAAAAAAAAAAAAGTCCAAGTGATATGTTTATTTCC
AGAAAAAGCATTTAGTCTGGAAGAAAGTAAAGCTTATTACTGAAGTTTAAAGTCTTTGTA
ATGTAATTAAAGAAAAAACACCCCCACATTTTAACCCCAAAATTTAATTTGTGATGATTT
TCTTTATGTAAAATGTACAAATCAAGTTAACTTGTAATCATATGGCATTATTAAACCGGA
CAAACAAAATAAATACTATTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTATATAAATAGCTGTTATATTCAGTCAGCTTTATAAAAATTCGTGGCTAAATAAT
CCAGGTAATTTCATCCTATGGCTGTTAATTTTTTTCATGAACATACATTTGATAATGCAG
GAGGATGTTAACTGAGCCATAAAAGATAAACACACTGTATATCACTTAGGTTGAATAAGG
GTGATGATATGATTCAGCAGCATGGAATTTGTATAGGTGGTTGAATTACTGTACTAGTCT
GAGGTCAGTTATAATTTTCCTTATTTGGAGACTCATAGTTGAGGTGAAACTTGTTTAAAA
ATGGCTTGTGATTCATATAAGTTTTGCCAAATGATACTTTGTATCAAAACTCTTTATATT
CTCTAACTCGTCCTTTTGCAGAGGTGTTCCTATGGAGGAGGTGTCTCTATGACCAAACGT
ATTTGGCAAAGTCTTACGTTCCTCTGGGAGCTTAGTAAAGCCGAAGGTACCTTAAATCTT
GTTTAATTTTATTTAACCCAATTCTTTCCAAACTTTTTTGACCACAGAACCCTTTCTCTT
AAGAAAACTAATGTTCCACGCCAAATCAACCCAATTGTCTGACAGTTCTTTTGCATTTTA
CATCAGATGGATAAATTTATATACACATTAACCATACAGAATATTTTACTAGAATTTTTT
ACTAGAATTTTTATACTGAAATGCAATTCACATTTTTGATGCTTTTAAAATAACTGATGT
AAACAGACATCCATTACCAAAGTAAAAATTAAATAATTTTATAATGAATATGACTAGGAT
ATGAATATAGTGTGGGAGTTTGTACTGGTTAACCCATGCCCCAGTTTTCTTATGATGATG
TAAATTATGGAAAAATGTACACTCTTAATGTCTAAGTGCTTTTATTTATACAGTAAACAT
GTTTCTGTGTCATTTTGAGAATTTTTAGTAAACATTCAAATAGCTTGCTATAAAGTTTTG
CATCATACAAAATCTGTTAACATATATATTATGAGATGCTTCAGTTCAAATAACAGTGCA
GTGATTCACCCATGCCTAAAAGACTGCCAAACAATTAATGTCAGGTGTTGCACTTCTACT
TCGAGTGGCAGTTTACATATTTTAAATTACATCAAGGGGACATCAATACTATTGGAAACT
TAATTTGGTCCACTTTAAATGTAATTTCAAAGACTGTGCTTGTATGATCCATGTAAGCAT
GCATTCAGAAACAAAAAGTAGTTTAAAAAAAAAAAAAGTCCAAGTGATATGTTTATTTCC
AGAAAAAGCATTTAGTCTGGAAGAAAGTAAAGCTTATTACTGAAGTTTAAAGTCTTTGTA
ATGTAATTAAAGAAAAAACACCCCCACATTTTAACCCCAAAATTTAATTTGTGATGATTT
TCTTTATGTAAAATGTACAAATCAAGTTAACTTGTAATCATATGGCATTATTAAACCGGA
CAAACAAAATAAATACTATTTGTC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               146-394, gnl|bosTau2|chr8 (36257286-36257550)
               

               
               146-394, gnl|Hg17|chr2 (163043845-163044099)
               


               
               651-1322, gnl|bosTau2|chr2 (18532689-18532035)
               

               
               651-1322, gnl|Hg17|chr2 (163044387-163045015)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-394, gnl|bosTau2|chr8 (36257286-36257550)
               

               
               146-394, gnl|Hg17|chr2 (163043845-163044099)
               


               
               651-1322, gnl|bosTau2|chr2 (18532689-18532035)
               

               
               651-1322, gnl|Hg17|chr2 (163044387-163045015)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	146-394, gnl\|bosTau2\|chr8 (36257286-36257550)
	146-394, gnl\|Hg17\|chr2 (163043845-163044099)

	651-1322, gnl\|bosTau2\|chr2 (18532689-18532035)
	651-1322, gnl\|Hg17\|chr2 (163044387-163045015)

	lin (0.291206)
	mgp (0.230681)
	tes (0.207814)
	mgm (0.180343)
	sin (0.174948)
	fco (0.157208)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	pla (0.133672)
	ret (0.128733)
	tra (0.123092)
	eru (0.120048)
	ecc (0.115035)