Ss1.1-rfat0118_g1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGACGTCCGCCTGCCCAGCCCCGACTGCCCCTTCCCACGGAGGGTCAAGCTGCCCGGG AAATGCTGCGAGGAGTGGGTGTGTGACGAGCCCAAGGACCACACCGTGGTCGGCCCTGCC CTGGCCGCTTACCGACTGGAAGACACGTTTGGCCCAGACCCAACTATGATGCGAGCCAAC TGCCTGGTCCAGACCACAGAGTGGAGTGCCTGTTCCAAGACCTGTGGGATGGGCATCTCC ACCCGGGTTACCAATGACAACGCTTTCTGCAGACTGGAGAAGCAGAGCCGCCTCTGCATG GTCAGGCCTTGTGAAGCTGACCTGGAAGAGAACATTAAGAAGGGCAAAAAGTGCATCCGT ACCCCCAAGATCTCCAAGCCCGTCAAGTTTGAGCTTTCCGGCTGCACCAGTGTGAAGACA TACCGGGCTAAGTTCTGCGGGGTATGCACAGACGGCCGCTGCTGCACCCCTCACAGAACC ACCACCCTTCCTGTGGAGTTCAAGTGTCCCGACGGTGAGGTCATGAAGAAGAGCATGATG TTCATCAAGACTTGTGCCTGCCATTACAACTGCCCGGGGGACAATGACATCTTCGAGTCC CTGTACTACAGGAAGATGTATGGAGACATGGCCTAAAGCCAGAGAGAGTGAGACCCATGA ACACTTGAGACTGTCACTTGAACTGATTCACATCTCATTTTTGCGTAAACATGATTTCAG TAGCACAGGTTATTTAAATCTGTTTTTCTAATGGGGGACAAAGGAAAATTCCCACCAACA TTCAAAATCGTGTGCCATGTGACATTCAAAAAAAGAGTCTATCAAACCCAGACACTGGTT TGAAGAAAGTTCAGACTTGACCGTGGGACGGTATTAGTGCAGAGCACCGGGATTGTATGC TGTGTGGCTTTAGGAGCTCTGGGAAGGCACGAGTAGAGAGTCTTGTCATCTTACGGCAGG GATGTGCCTGCTATTGGGTGTCATTGAGAAGGAAAACTTGAGCATGCTCACTGAGCTGCC TTTAGCACCAATGACAGCTGAGATGTGCATTCTCCAGCTGTCAGGAGGCTGGGTCAAGTT CTTCTTTAAGTCAGAACAGAAGATTCAGCTCTGACATTCTGATTCGGTTGAGTGTTCAGG AATCAGAATCCTGTCTGTAAGACTGGACAGCTTGTGGCAAGCTGTTTTGCCTGTAACAAG CCAGATTTTTTTTTTTTTTATTGATATTGTAAATATTGTGTATATATATATATTTGTACA GTTATCTAAGTTAATTTAAAGTTGTTTGTGCCTTTTTGTTTCTGTTTTTAATGCTTTGGT ATTTCAAATGTTAGCCTCCATTCTGAACACCATAGGTAGGATGTAAAGCTTGTCTGATCA TTCAAAGCATGGAATAGACATTCGAATGGAAATTCTGCTCAGTTAAGAGCAGCAGTTCAT CCATCAATACAGGTTGTTTGCTGAAGGTGAGGCAGCAGCAATGTCCTTGGCAGTCTGATT TGTAGGTAGGAAATGTGGTAGCCTCACTTTTAATGAAAAAAATGACTTTTATTAAAAAAT GAGTGGCTCTATACAGCTGATTGGTTTTTCCACCTGGAAGCATTTGTTTCTACTTTGACT ATGACTGTTTTTTGGACAGTTTATTTGTTGAGAGTGTGACCAAAAGTTACATGTTTGCAC CTTTCTAGTTGAAAATAAAGTATATATTTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGACGTCCGCCTGCCCAGCCCCGACTGCCCCTTCCCACGGAGGGTCAAGCTGCCCGGG AAATGCTGCGAGGAGTGGGTGTGTGACGAGCCCAAGGACCACACCGTGGTCGGCCCTGCC CTGGCCGCTTACCGACTGGAAGACACGTTTGGCCCAGACCCAACTATGATGCGAGCCAAC TGCCTGGTCCAGACCACAGAGTGGAGTGCCTGTTCCAAGACCTGTGGGATGGGCATCTCC ACCCGGGTTACCAATGACAACGCTTTCTGCAGACTGGAGAAGCAGAGCCGCCTCTGCATG GTCAGGCCTTGTGAAGCTGACCTGGAAGAGAACATTAAGAAGGGCAAAAAGTGCATCCGT ACCCCCAAGATCTCCAAGCCCGTCAAGTTTGAGCTTTCCGGCTGCACCAGTGTGAAGACA TACCGGGCTAAGTTCTGCGGGGTATGCACAGACGGCCGCTGCTGCACCCCTCACAGAACC ACCACCCTTCCTGTGGAGTTCAAGTGTCCCGACGGTGAGGTCATGAAGAAGAGCATGATG TTCATCAAGACTTGTGCCTGCCATTACAACTGCCCGGGGGACAATGACATCTTCGAGTCC CTGTACTACAGGAAGATGTATGGAGACATGGCCTAAAGCCAGAGAGAGTGAGACCCATGA ACACTTGAGACTGTCACTTGAACTGATTCACATCTCATTTTTGCGTAAACATGATTTCAG TAGCACAGGTTATTTAAATCTGTTTTTCTAATGGGGGACAAAGGAAAATTCCCACCAACA TTCAAAATCGTGTGCCATGTGACATTCAAAAAAAGAGTCTATCAAACCCAGACACTGGTT TGAAGAAAGTTCAGACTTGACCGTGGGACGGTATTAGTGCAGAGCACCGGGATTGTATGC TGTGTGGCTTTAGGAGCTCTGGGAAGGCACGAGTAGAGAGTCTTGTCATCTTACGGCAGG GATGTGCCTGCTATTGGGTGTCATTGAGAAGGAAAACTTGAGCATGCTCACTGAGCTGCC TTTAGCACCAATGACAGCTGAGATGTGCATTCTCCAGCTGTCAGGAGGCTGGGTCAAGTT CTTCTTTAAGTCAGAACAGAAGATTCAGCTCTGACATTCTGATTCGGTTGAGTGTTCAGG AATCAGAATCCTGTCTGTAAGACTGGACAGCTTGTGGCAAGCTGTTTTGCCTGTAACAAG CCAGATTTTTTTTTTTTTTATTGATATTGTAAATATTGTGTATATATATATATTTGTACA GTTATCTAAGTTAATTTAAAGTTGTTTGTGCCTTTTTGTTTCTGTTTTTAATGCTTTGGT ATTTCAAATGTTAGCCTCCATTCTGAACACCATAGGTAGGATGTAAAGCTTGTCTGATCA TTCAAAGCATGGAATAGACATTCGAATGGAAATTCTGCTCAGTTAAGAGCAGCAGTTCAT CCATCAATACAGGTTGTTTGCTGAAGGTGAGGCAGCAGCAATGTCCTTGGCAGTCTGATT TGTAGGTAGGAAATGTGGTAGCCTCACTTTTAATGAAAAAAATGACTTTTATTAAAAAAT GAGTGGCTCTATACAGCTGATTGGTTTTTCCACCTGGAAGCATTTGTTTCTACTTTGACT ATGACTGTTTTTTGGACAGTTTATTTGTTGAGAGTGTGACCAAAAGTTACATGTTTGCAC CTTTCTAGTTGAAAATAAAGTATATATTTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 377-536, - strand, RNAz p=0.996712 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 377-536, - strand, RNAz p=0.996712 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 2-125, gnl|bosTau2|chr1 (43061488-43061365) | |
| 2-125, gnl|canFam2|chr1 (28056807-28057094) | |
| 2-125, gnl|danRer3|chr20 (27369433-27369719) | |
| 2-125, gnl|dasNov1|scaffold_14425 (9048-8763) | |
| 2-125, gnl|echTel1|scaffold_240780 (11913-11634) | |
| 2-125, gnl|fr1|chrUn (207596435-207596709) | |
| 2-125, gnl|galGal2|chrUn (9748088-9748380) | |
| 2-125, gnl|hg17|chr6 (132313111-132313398) | |
| 2-125, gnl|Hg17|chr6 (132313250-132313127) | |
| 2-125, gnl|loxAfr1|scaffold_17079 (12069-11751) | |
| 2-125, gnl|mm7|chr10 (24347539-24347255) | |
| 2-125, gnl|Mm7|chr10 (24347400-24347523) | |
| 2-125, gnl|monDom2|scaffold_0 (79879691-79879396) | |
| 2-125, gnl|oryCun1|scaffold_204991 (43655-43942) | |
| 2-125, gnl|panTro1|chr5 (134960433-134960720) | |
| 2-125, gnl|rheMac2|chr4 (131944351-131944064) | |
| 2-125, gnl|rn3|chr1 (21330526-21330810) | |
| 2-125, gnl|tetNig1|chr14 (6613184-6613458) | |
| 2-125, gnl|xenTro1|scaffold_505 (871066-871351) | |
| 177-314, gnl|bosTau2|chr14 (26103339-26103476) | |
| 177-314, gnl|canFam2|chr13 (21543812-21544038) | |
| 177-314, gnl|danRer3|chr20 (27369248-27369025) | |
| 177-314, gnl|dasNov1|scaffold_6548 (58430-58658) | |
| 177-314, gnl|echTel1|scaffold_322549 (14939-15166) | |
| 177-314, gnl|fr1|chrUn (258489163-258489367) | |
| 177-314, gnl|galGal2|chr2 (132706919-132706704) | |
| 177-314, gnl|hg17|chr8 (120500551-120500777) | |
| 177-314, gnl|Hg17|chr8 (120500601-120500738) | |
| 177-314, gnl|loxAfr1|scaffold_43 (7789-7562) | |
| 177-314, gnl|mm7|chr15 (54809269-54809495) | |
| 177-314, gnl|Mm7|chr15 (54809319-54809456) | |
| 177-314, gnl|monDom2|scaffold_3 (36498469-36498250) | |
| 177-314, gnl|oryCun1|scaffold_195767 (21969-21743) | |
| 177-314, gnl|panTro1|chr7 (123126950-123127176) | |
| 177-314, gnl|rheMac2|chr8 (121926854-121927080) | |
| 177-314, gnl|rn3|chr7 (91200003-91200229) | |
| 177-314, gnl|tetNig1|chr8 (5164223-5164427) | |
| 177-314, gnl|xenTro1|scaffold_330 (884635-884410) | |
| 338-575, gnl|bosTau2|chr14 (26106565-26106802) | |
| 338-575, gnl|canFam2|chr13 (21546914-21547097) | |
| 338-575, gnl|danRer3|chr20 (27368943-27368787) | |
| 338-575, gnl|dasNov1|scaffold_6548 (61528-61714) | |
| 338-575, gnl|echTel1|scaffold_322549 (18839-19023) | |
| 338-575, gnl|fr1|chrUn (258489438-258489624) | |
| 338-575, gnl|galGal2|chr2 (132705680-132705521) | |
| 338-575, gnl|hg17|chr8 (120504215-120504398) | |
| 338-575, gnl|Hg17|chr8 (120504255-120504492) | |
| 338-575, gnl|loxAfr1|scaffold_43 (4670-4489) | |
| 338-575, gnl|mm7|chr15 (54812284-54812470) | |
| 338-575, gnl|Mm7|chr15 (54812327-54812564) | |
| 338-575, gnl|monDom2|scaffold_3 (36495731-36495564) | |
| 338-575, gnl|oryCun1|scaffold_195767 (17920-17740) | |
| 338-575, gnl|panTro1|chr7 (123130643-123130826) | |
| 338-575, gnl|rheMac2|chr8 (121930552-121930735) | |
| 338-575, gnl|rn3|chr7 (91203230-91203415) | |
| 338-575, gnl|tetNig1|chr8 (5164527-5164685) | |
| 338-575, gnl|xenTro1|scaffold_330 (883377-883200) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-125, gnl|bosTau2|chr1 (43061488-43061365) | |
| 2-125, gnl|canFam2|chr1 (28056807-28057094) | |
| 2-125, gnl|danRer3|chr20 (27369433-27369719) | |
| 2-125, gnl|dasNov1|scaffold_14425 (9048-8763) | |
| 2-125, gnl|echTel1|scaffold_240780 (11913-11634) | |
| 2-125, gnl|fr1|chrUn (207596435-207596709) | |
| 2-125, gnl|galGal2|chrUn (9748088-9748380) | |
| 2-125, gnl|hg17|chr6 (132313111-132313398) | |
| 2-125, gnl|Hg17|chr6 (132313250-132313127) | |
| 2-125, gnl|loxAfr1|scaffold_17079 (12069-11751) | |
| 2-125, gnl|mm7|chr10 (24347539-24347255) | |
| 2-125, gnl|Mm7|chr10 (24347400-24347523) | |
| 2-125, gnl|monDom2|scaffold_0 (79879691-79879396) | |
| 2-125, gnl|oryCun1|scaffold_204991 (43655-43942) | |
| 2-125, gnl|panTro1|chr5 (134960433-134960720) | |
| 2-125, gnl|rheMac2|chr4 (131944351-131944064) | |
| 2-125, gnl|rn3|chr1 (21330526-21330810) | |
| 2-125, gnl|tetNig1|chr14 (6613184-6613458) | |
| 2-125, gnl|xenTro1|scaffold_505 (871066-871351) | |
| 177-314, gnl|bosTau2|chr14 (26103339-26103476) | |
| 177-314, gnl|canFam2|chr13 (21543812-21544038) | |
| 177-314, gnl|danRer3|chr20 (27369248-27369025) | |
| 177-314, gnl|dasNov1|scaffold_6548 (58430-58658) | |
| 177-314, gnl|echTel1|scaffold_322549 (14939-15166) | |
| 177-314, gnl|fr1|chrUn (258489163-258489367) | |
| 177-314, gnl|galGal2|chr2 (132706919-132706704) | |
| 177-314, gnl|hg17|chr8 (120500551-120500777) | |
| 177-314, gnl|Hg17|chr8 (120500601-120500738) | |
| 177-314, gnl|loxAfr1|scaffold_43 (7789-7562) | |
| 177-314, gnl|mm7|chr15 (54809269-54809495) | |
| 177-314, gnl|Mm7|chr15 (54809319-54809456) | |
| 177-314, gnl|monDom2|scaffold_3 (36498469-36498250) | |
| 177-314, gnl|oryCun1|scaffold_195767 (21969-21743) | |
| 177-314, gnl|panTro1|chr7 (123126950-123127176) | |
| 177-314, gnl|rheMac2|chr8 (121926854-121927080) | |
| 177-314, gnl|rn3|chr7 (91200003-91200229) | |
| 177-314, gnl|tetNig1|chr8 (5164223-5164427) | |
| 177-314, gnl|xenTro1|scaffold_330 (884635-884410) | |
| 338-575, gnl|bosTau2|chr14 (26106565-26106802) | |
| 338-575, gnl|canFam2|chr13 (21546914-21547097) | |
| 338-575, gnl|danRer3|chr20 (27368943-27368787) | |
| 338-575, gnl|dasNov1|scaffold_6548 (61528-61714) | |
| 338-575, gnl|echTel1|scaffold_322549 (18839-19023) | |
| 338-575, gnl|fr1|chrUn (258489438-258489624) | |
| 338-575, gnl|galGal2|chr2 (132705680-132705521) | |
| 338-575, gnl|hg17|chr8 (120504215-120504398) | |
| 338-575, gnl|Hg17|chr8 (120504255-120504492) | |
| 338-575, gnl|loxAfr1|scaffold_43 (4670-4489) | |
| 338-575, gnl|mm7|chr15 (54812284-54812470) | |
| 338-575, gnl|Mm7|chr15 (54812327-54812564) | |
| 338-575, gnl|monDom2|scaffold_3 (36495731-36495564) | |
| 338-575, gnl|oryCun1|scaffold_195767 (17920-17740) | |
| 338-575, gnl|panTro1|chr7 (123130643-123130826) | |
| 338-575, gnl|rheMac2|chr8 (121930552-121930735) | |
| 338-575, gnl|rn3|chr7 (91203230-91203415) | |
| 338-575, gnl|tetNig1|chr8 (5164527-5164685) | |
| 338-575, gnl|xenTro1|scaffold_330 (883377-883200) |
| Expressed library(ies): 42 entry(ies) | More info |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
| gul (6.57077) | |
| aor (3.31966) | |
| sug (1.65479) | |
| tra (1.10783) | |
| nca (1.09499) | |
| fat (1.03199) | |
| liv (1.02399) | |
| pla (0.802032) | |
| ova (0.774793) | |
| lyg (0.665513) | |
| nlu (0.575043) | |
| spc (0.566829) | |
| nep (0.551775) | |
| nmm (0.531209) | |
| kid (0.518941) | |
| jca (0.45584) | |
| ski (0.440205) | |
| hea (0.408998) | |
| ute (0.398353) | |
| cov (0.396458) | |
| ret (0.3862) | |
| elu (0.385356) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| spl (0.286369) | |
| che (0.272628) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 42 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (6.57077) | |
| aor (3.31966) | |
| sug (1.65479) | |
| tra (1.10783) | |
| nca (1.09499) | |
| fat (1.03199) | |
| liv (1.02399) | |
| pla (0.802032) | |
| ova (0.774793) | |
| lyg (0.665513) | |
| nlu (0.575043) | |
| spc (0.566829) | |
| nep (0.551775) | |
| nmm (0.531209) | |
| kid (0.518941) | |
| jca (0.45584) | |
| ski (0.440205) | |
| hea (0.408998) | |
| ute (0.398353) | |
| cov (0.396458) | |
| ret (0.3862) | |
| elu (0.385356) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| spl (0.286369) | |
| che (0.272628) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |