Non-Coding RNA Search

Ss1.1-rfat0119_b12.5.5

Sequence:


               
               CTGAACTTTGTTTTAATCACACCAGAAAGATCAATGTCATTGTACTACGTTATAACAAAA
TTGAAGAAAACAGAATTGCTCCTTTAGCTTGGATAAATCAAGAAAATCTAGAATCGATTG
ACCTCTCCTATAACAAGCTCTACCACGTCCCCTCCTATTTACCCAAGTCACTGCTGCACC
TCGTGCTTATCGGCAACCTGATAGAGCGCATCCCTGGCTATGTGTTTGGCCACATGGAAC
CAGGTCTAGAATACCTGTACCTGTCATTTAACAAACTTGTGGATGATAGCATAGACCGAG
TCTCCTTCTATGGGGCTTATCATTCTCTGCGAGAGCTGTTTCTGGATCATAATGAATTAA
AATCTATACCTCCTGGGGTACAAGAAATGAAAGCGCTACATTTTCTGAGACTGAACAACA
ACAAGATACGGAATATTCTTCCAGAACAAATATGCAATGTTGAAGAAGATGGTGATTCAA
CCCTGGAACACCTTCATCTTGAGAACAACTATATTAAAACAAGAGAAATATCATCCTATG
CATTTTCATGCATAAGATCATATTCCAGTATCATTCTTAAGCCACAAAATATCAAGTAAT
TCCAAGTTTTTGTCATTTGTAAAATACACTCATATATCTGTCTTAGTAGCATTTGTCATC
AATGAGAGATATAATGCCATGTTCTATCCAGTATCATTGTGCTAGACAACCTGATTTGCC
AACCCACGGAACAACCAAAAATATATCTACAAGGTTTAGTCTTCTAACAGTTTCGTTGAA
GGTTTCAGTTTCACACTCTAGAAAGAAGCAATCTAATTGCAAAGTTTTCTCATGAAAACA
GAATGTTGTGCACTGCTCAGCTAGACTGGGAGAATCTGGAACAAAATAAGCAGGTCCCTT
GACTAAGTATTGCTATTAGTTATGAACTCCCTAAGTCCTTTAAAAAATTTTGTATATGTT
ATGGTTGAAGGCCAAGAAGTGGATGGCAGGAAAGAATAATAGGTAGAATCTATGAGCTAG
TGTTCTGTTTATTATTCTATTGTTAAAACAATAATTTATTAATTTTCTAAAAACCCTATG
ATACAGTTATTGGTATGAAATTATTGGCTTAGCTTTAGTTCCTTCTATTAATTATATGGG
TAGAATTAAAACGCTACTATAAAGTTAATTTCCTGGTTTTGAGAATTGTACTATGGCTAA
GTATGTGGTTATTAACATTAGGGGAAGCTGGGAGAAGGGTATATGTGAGTTCCATATGAT
TTTTGTAATTTTTCTATAAGTCTAAAATTTCTAAAAAGTTAAACAGTTTTTTAAGTTTTT
CACCTTCATTATTCTTTGCTGAAGATCAAAATTTTATGGGAAGTAGCAGTGTTTGCTGAA
AAGTTAATTATCCATGACTAAACCTTGTAAATGGAAACCTAGCACATAAATTTTTGCTCG
TCTAGTCACTGTTAGCACCTCTTTTCCTTGCCCTAATTTGCTCAAATGTATCATTTTACT
CAGTTCAATTTAACATAAAGCTATTAGTACTCACTGTGTACTCCATCCTACCAAAACCAT
ATATTAAAATTTTCAGTATGGGCTGATTTTTTATCTTTATTTTAAAAATAATTTGTAAAA
TACACATATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAACTTTGTTTTAATCACACCAGAAAGATCAATGTCATTGTACTACGTTATAACAAAA
TTGAAGAAAACAGAATTGCTCCTTTAGCTTGGATAAATCAAGAAAATCTAGAATCGATTG
ACCTCTCCTATAACAAGCTCTACCACGTCCCCTCCTATTTACCCAAGTCACTGCTGCACC
TCGTGCTTATCGGCAACCTGATAGAGCGCATCCCTGGCTATGTGTTTGGCCACATGGAAC
CAGGTCTAGAATACCTGTACCTGTCATTTAACAAACTTGTGGATGATAGCATAGACCGAG
TCTCCTTCTATGGGGCTTATCATTCTCTGCGAGAGCTGTTTCTGGATCATAATGAATTAA
AATCTATACCTCCTGGGGTACAAGAAATGAAAGCGCTACATTTTCTGAGACTGAACAACA
ACAAGATACGGAATATTCTTCCAGAACAAATATGCAATGTTGAAGAAGATGGTGATTCAA
CCCTGGAACACCTTCATCTTGAGAACAACTATATTAAAACAAGAGAAATATCATCCTATG
CATTTTCATGCATAAGATCATATTCCAGTATCATTCTTAAGCCACAAAATATCAAGTAAT
TCCAAGTTTTTGTCATTTGTAAAATACACTCATATATCTGTCTTAGTAGCATTTGTCATC
AATGAGAGATATAATGCCATGTTCTATCCAGTATCATTGTGCTAGACAACCTGATTTGCC
AACCCACGGAACAACCAAAAATATATCTACAAGGTTTAGTCTTCTAACAGTTTCGTTGAA
GGTTTCAGTTTCACACTCTAGAAAGAAGCAATCTAATTGCAAAGTTTTCTCATGAAAACA
GAATGTTGTGCACTGCTCAGCTAGACTGGGAGAATCTGGAACAAAATAAGCAGGTCCCTT
GACTAAGTATTGCTATTAGTTATGAACTCCCTAAGTCCTTTAAAAAATTTTGTATATGTT
ATGGTTGAAGGCCAAGAAGTGGATGGCAGGAAAGAATAATAGGTAGAATCTATGAGCTAG
TGTTCTGTTTATTATTCTATTGTTAAAACAATAATTTATTAATTTTCTAAAAACCCTATG
ATACAGTTATTGGTATGAAATTATTGGCTTAGCTTTAGTTCCTTCTATTAATTATATGGG
TAGAATTAAAACGCTACTATAAAGTTAATTTCCTGGTTTTGAGAATTGTACTATGGCTAA
GTATGTGGTTATTAACATTAGGGGAAGCTGGGAGAAGGGTATATGTGAGTTCCATATGAT
TTTTGTAATTTTTCTATAAGTCTAAAATTTCTAAAAAGTTAAACAGTTTTTTAAGTTTTT
CACCTTCATTATTCTTTGCTGAAGATCAAAATTTTATGGGAAGTAGCAGTGTTTGCTGAA
AAGTTAATTATCCATGACTAAACCTTGTAAATGGAAACCTAGCACATAAATTTTTGCTCG
TCTAGTCACTGTTAGCACCTCTTTTCCTTGCCCTAATTTGCTCAAATGTATCATTTTACT
CAGTTCAATTTAACATAAAGCTATTAGTACTCACTGTGTACTCCATCCTACCAAAACCAT
ATATTAAAATTTTCAGTATGGGCTGATTTTTTATCTTTATTTTAAAAATAATTTGTAAAA
TACACATATGGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               104-437, gnl|bosTau2|chr7 (51832832-51832499)
               

               
               104-437, gnl|Hg17|chr9 (92342890-92342557)
               

               
               104-437, gnl|Mm7|chr13 (49013942-49014275)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-437, gnl|bosTau2|chr7 (51832832-51832499)
               

               
               104-437, gnl|Hg17|chr9 (92342890-92342557)
               

               
               104-437, gnl|Mm7|chr13 (49013942-49014275)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               fat (1.17942)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (1.17942)
               

               
               sme (0.305437)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	104-437, gnl\|bosTau2\|chr7 (51832832-51832499)
	104-437, gnl\|Hg17\|chr9 (92342890-92342557)
	104-437, gnl\|Mm7\|chr13 (49013942-49014275)

	fat (1.17942)
	sme (0.305437)
	liv (0.292569)
	ret (0.257467)
	tra (0.246184)
	ebs (0.236602)
	aor (0.195274)
	sag (0.182715)
	mcp (0.170648)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)