Non-Coding RNA Search

Ss1.1-rfat0119_b6.5

Sequence:


               
               AAGATTGCTTCATGAGCTAATGGTTCATATATGCAAAAGGGTAAGACGAAAGCTTTACTT
TGTACAGATGTAAATAGATAAAGATTAAGTAACATAATACATTAATACTTCTTAAAATGT
GCTATTTGCAGACTTAATATCAGTGAGCACAGTCGGCGACGGCTGTGTTCCCGTGTATTG
TTCTAGACAGCTAAACCCTTCAACTATGCAATGAATGTTAGGGCTTTTCACAAAAGCCCG
CCTAACTCAAAGGAGCCTTTTCAAGTCCATTTACAACATACTTAAGGTCATATTTTCCCT
GAACAAGCACTTACGTGATATGACTCTGTTTTCCTTGCTTGTTTTGTTTTCAAATGGAGA
AACACCCGATTTTGCAAATCGGACCCCAGGCTGAAACTTTGCACCTGAAGTTGCTGCTTG
TGGGCCTTGGGGGAGGAGAGAGAGTGCAGCTCCGAAACGGTAACGGAGGACGTGAGCAGC
CAGTGTCAGGGAGGACGGGAGTTGTCAGATGCCAAAATCAGGGGACACAAACAGGTCGCC
AGCATCTCCTCACCATCCGTCACGTGATTTCACACACACCTCATGTGGCAACCATGTGTT
TTTTCAGTGTCTCCCCTCGCTGTACACACCTCCTCGTTTTGTAACAAGCTTCCGTGACAC
CCAAACAGATCCTGAAAGAAAGCTTCGCGTTTTCTCAGATGATGGATGTGTTTTCACCGT
ATTCGATAACTGATGAAGTTAGGGGCACGTTTCCTAGTGTGACTCATCGTATCCCCGTAG
GTAATCGAGTCTGGGAGGAGCCAAAAACAGGTCAACCTGGTTGGGGCCAGGAGGGTTCCA
GAGGGTGAAAGGTGGCAGAGACAGTCTTGTGTGCGCGTGTGTTTTTTGAGTTTGCATCAA
CCTTAAATGTCTCTTCATGATACTTTTATAATACATTCAGCCTCTTGTCTACATATTTGG
AGAGAATATGACTTTACTAGCAGAGAAATACAATATATCTTGTCTACTGGACTGTAAAAT
ATATGTATGAAATAAAATTAGTTCCATTTGGTCTTCTAGTATATTAAAGTGCTATCTGAC
GTTGTTATCCTGTTTTTGCAAAAAAAAAAACAAAAAAAAGTTAACTACAGACCATCGTTT
CTAATAAGCAGAGAGATCTATTTTAGTAGTCAACGAAGGTTTAGTTGTGAGCTTCAGATT
TTGTGAATTCCAGATGTTGTGCAGTGTTTTTTTCTTTTGTTTGTTTGTTTTTGTTTTGTT
TTTTTAAGACAACAACTAAAAAGAAAACGAAAAAAAATCCAAGGAATATGTACACTGGAA
CCGTAGTGGTAGCTTTCAGTATTGTAAAGAGATTGTTCTATACAGACCTTTTTGCTGTTT
CTCCTGTATGTAATAAAGTCCTTTCTAGATCCTATGTGAAAAGAAACGTGAAAGCGACTG
AGTCTTCAGCATGTTCTCATCGGCGGAGCCTTCTTGTGTTATGTAAACTGTGCCATGTTA
TTAAAAAATGTGAACCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATTGCTTCATGAGCTAATGGTTCATATATGCAAAAGGGTAAGACGAAAGCTTTACTT
TGTACAGATGTAAATAGATAAAGATTAAGTAACATAATACATTAATACTTCTTAAAATGT
GCTATTTGCAGACTTAATATCAGTGAGCACAGTCGGCGACGGCTGTGTTCCCGTGTATTG
TTCTAGACAGCTAAACCCTTCAACTATGCAATGAATGTTAGGGCTTTTCACAAAAGCCCG
CCTAACTCAAAGGAGCCTTTTCAAGTCCATTTACAACATACTTAAGGTCATATTTTCCCT
GAACAAGCACTTACGTGATATGACTCTGTTTTCCTTGCTTGTTTTGTTTTCAAATGGAGA
AACACCCGATTTTGCAAATCGGACCCCAGGCTGAAACTTTGCACCTGAAGTTGCTGCTTG
TGGGCCTTGGGGGAGGAGAGAGAGTGCAGCTCCGAAACGGTAACGGAGGACGTGAGCAGC
CAGTGTCAGGGAGGACGGGAGTTGTCAGATGCCAAAATCAGGGGACACAAACAGGTCGCC
AGCATCTCCTCACCATCCGTCACGTGATTTCACACACACCTCATGTGGCAACCATGTGTT
TTTTCAGTGTCTCCCCTCGCTGTACACACCTCCTCGTTTTGTAACAAGCTTCCGTGACAC
CCAAACAGATCCTGAAAGAAAGCTTCGCGTTTTCTCAGATGATGGATGTGTTTTCACCGT
ATTCGATAACTGATGAAGTTAGGGGCACGTTTCCTAGTGTGACTCATCGTATCCCCGTAG
GTAATCGAGTCTGGGAGGAGCCAAAAACAGGTCAACCTGGTTGGGGCCAGGAGGGTTCCA
GAGGGTGAAAGGTGGCAGAGACAGTCTTGTGTGCGCGTGTGTTTTTTGAGTTTGCATCAA
CCTTAAATGTCTCTTCATGATACTTTTATAATACATTCAGCCTCTTGTCTACATATTTGG
AGAGAATATGACTTTACTAGCAGAGAAATACAATATATCTTGTCTACTGGACTGTAAAAT
ATATGTATGAAATAAAATTAGTTCCATTTGGTCTTCTAGTATATTAAAGTGCTATCTGAC
GTTGTTATCCTGTTTTTGCAAAAAAAAAAACAAAAAAAAGTTAACTACAGACCATCGTTT
CTAATAAGCAGAGAGATCTATTTTAGTAGTCAACGAAGGTTTAGTTGTGAGCTTCAGATT
TTGTGAATTCCAGATGTTGTGCAGTGTTTTTTTCTTTTGTTTGTTTGTTTTTGTTTTGTT
TTTTTAAGACAACAACTAAAAAGAAAACGAAAAAAAATCCAAGGAATATGTACACTGGAA
CCGTAGTGGTAGCTTTCAGTATTGTAAAGAGATTGTTCTATACAGACCTTTTTGCTGTTT
CTCCTGTATGTAATAAAGTCCTTTCTAGATCCTATGTGAAAAGAAACGTGAAAGCGACTG
AGTCTTCAGCATGTTCTCATCGGCGGAGCCTTCTTGTGTTATGTAAACTGTGCCATGTTA
TTAAAAAATGTGAACCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-198, + strand, RNAz p=0.638905

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-198, + strand, RNAz p=0.638905

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015570, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015570, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1518, gnl|bosTau2|chr25 (27547575-27546073)
               

               
               5-1518, gnl|Hg17|chr7 (69701037-69702507)
               

               
               5-1518, gnl|Mm7|chr5 (130675764-130674065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1518, gnl|bosTau2|chr25 (27547575-27546073)
               

               
               5-1518, gnl|Hg17|chr7 (69701037-69702507)
               

               
               5-1518, gnl|Mm7|chr5 (130675764-130674065)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               sag (1.27901)
               

               
               cbe (0.956938)
               

               
               elu (0.770713)
               

               
               ret (0.643666)
               

               
               fco (0.628832)
               

               
               isp (0.601504)
               

               
               mgp (0.461361)
               

               
               ecc (0.46014)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               gul (0.355177)
               

               
               lun (0.300978)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (1.27901)
               

               
               cbe (0.956938)
               

               
               elu (0.770713)
               

               
               ret (0.643666)
               

               
               fco (0.628832)
               

               
               isp (0.601504)
               

               
               mgp (0.461361)
               

               
               ecc (0.46014)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               gul (0.355177)
               

               
               lun (0.300978)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	5-1518, gnl\|bosTau2\|chr25 (27547575-27546073)
	5-1518, gnl\|Hg17\|chr7 (69701037-69702507)
	5-1518, gnl\|Mm7\|chr5 (130675764-130674065)

	sag (1.27901)
	cbe (0.956938)
	elu (0.770713)
	ret (0.643666)
	fco (0.628832)
	isp (0.601504)
	mgp (0.461361)
	ecc (0.46014)
	amn (0.417711)
	tra (0.369276)
	gul (0.355177)
	lun (0.300978)
	lyg (0.266205)
	kid (0.259471)
	fcc (0.197785)
	cmu (0.186393)
	mgm (0.180343)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	tbr (0.154178)
	bfe (0.149858)
	fat (0.147427)
	lin (0.145603)
	nca (0.136874)
	pla (0.133672)
	eep (0.122564)
	ebs (0.118301)
	spc (0.113366)