Non-Coding RNA Search

Ss1.1-rfat0119_j8.5

Sequence:


               
               AAACGCGTTGCGTAGTTCGTGGGGTGGGGGGAGGGGCGGGGGGAACTCCATCAGGTTTGT
CGCCACCAAATTTTTCAAGAAGTTTCTTGAGACCATTGCCTTTAAAAAACAACAACAAAA
AACACACAACTATTTTCGACATAAAAAATATTTATATAAATATTATTTATTAGTGAGTTG
TTATTCATCCTTTGGATGCAAATTGTAAATTAGGAAACTATTTTATTACTGCTTTTTTGT
GGTTAAACACTTTATTTTAATATTATAAATATTGAGTTATTTTCTATCCTCTTTGGTGTG
CACATAGATCTAGGTTTCCATTGTCATGTTCTTTGCTGTCTATGACTCAAAAAAAAAAAA
AAGAAGCAAAAAACAGGCACTTCTGTGACGAGAACTGTTTTCTGGGGAGGCATTATTTAC
ACTTTGGTTTATGCAACATTGGTCTTATTTATATTTCTGCATTCCATCCAGCTTCCTACA
TTCCAGCAGCCCTTTTGTCCCCCTGATAGAATGAACTGACTGAAATCAAGAGAGCACCCC
AAAGTTATGTGTAAATAGCTGTGATGGGAAAAAAAAAAAAAAGACATATTAAACTTGAAG
ATCAAATGTGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACGCGTTGCGTAGTTCGTGGGGTGGGGGGAGGGGCGGGGGGAACTCCATCAGGTTTGT
CGCCACCAAATTTTTCAAGAAGTTTCTTGAGACCATTGCCTTTAAAAAACAACAACAAAA
AACACACAACTATTTTCGACATAAAAAATATTTATATAAATATTATTTATTAGTGAGTTG
TTATTCATCCTTTGGATGCAAATTGTAAATTAGGAAACTATTTTATTACTGCTTTTTTGT
GGTTAAACACTTTATTTTAATATTATAAATATTGAGTTATTTTCTATCCTCTTTGGTGTG
CACATAGATCTAGGTTTCCATTGTCATGTTCTTTGCTGTCTATGACTCAAAAAAAAAAAA
AAGAAGCAAAAAACAGGCACTTCTGTGACGAGAACTGTTTTCTGGGGAGGCATTATTTAC
ACTTTGGTTTATGCAACATTGGTCTTATTTATATTTCTGCATTCCATCCAGCTTCCTACA
TTCCAGCAGCCCTTTTGTCCCCCTGATAGAATGAACTGACTGAAATCAAGAGAGCACCCC
AAAGTTATGTGTAAATAGCTGTGATGGGAAAAAAAAAAAAAAGACATATTAAACTTGAAG
ATCAAATGTGAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-615, gnl|bosTau2|chr12 (7377067-7377661)
               

               
               1-615, gnl|Hg17|chr13 (46223145-46223701)
               

               
               1-615, gnl|Mm7|chr14 (69438380-69437789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-615, gnl|bosTau2|chr12 (7377067-7377661)
               

               
               1-615, gnl|Hg17|chr13 (46223145-46223701)
               

               
               1-615, gnl|Mm7|chr14 (69438380-69437789)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cut (0.339847)
               

               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)

	1-615, gnl\|bosTau2\|chr12 (7377067-7377661)
	1-615, gnl\|Hg17\|chr13 (46223145-46223701)
	1-615, gnl\|Mm7\|chr14 (69438380-69437789)

	cut (0.339847)
	fce (0.271592)
	fbs (0.175346)
	mga (0.160205)
	bfe (0.149858)
	fat (0.147427)