Non-Coding RNA Search

Ss1.1-rfat0119_p12.5

Sequence:


               
               ATGCTGGGCAAGTGGGTACTTTTTAGCTCCTCTCCAAAGGAAGAGGTTTTAAAACCAAGT
CAGAGGAAGAAAAATGCCAGTGACAGCTGAAAGTTAACGTGGCGTAAATACCAAGTTCCC
TGGGTCAGCGCCCTAAGGACCATGCTGAGCTCCCTGGGTACTCGGCTTCCACAGTCATCT
CTTAATCTTCTGTCCTCCTGGCAAATTTGAAAATTCAAAAAACCAAGCAGCTTGACAGCA
AGTGCCACGTCCCTCTGGCCTCATTGTCCTCTGCGCACTTCATCCCGCTGGCCAGAAGGA
AGGCGCTGCTCGTCAGTAACTGAACAGGGGATGCCGACGGAGAAAACTGGAGTCCCCAGC
TCCGCACCAAATAAGAGATTTTCCAGTTGGTAGTGACCTGCCCCTCTTGCAGTTGAAAGT
AAGTCCGCTTGGGCCTATGCTGCACCCTCCACGTCTGGCCTTTGGCTCTTGGTGAGGCTT
GGCCTGATGTGTTTAAATAACGGCCCCAGGTTTGAGCCACGGCAGGTACAGGGCTGATAC
TTTCCCGGCTTGCTGCTCTCAGCCGCTCTCCGGAGCCGTCCCCCCAGCAGCTCCTCCACG
ACGCCCGTCGAATGCTGTTATGCTGAAGGATGAGGGAGGACGTGGAAAAGAAGTGCCATT
TCTGCTGCTGCTGCTTCAGAGGCCACCCTGTTCTGGATGAGACATGGGGAGATGGTCAGA
CAGCCTGCAACACTGACGTGACTGTTGTGTAAAAACGCTGCGTAATCCTCAATGTATATT
TATATATTTTTATTTTTTATAACTTTAGGGGAATGGGTGGAGGGGAAAAGTAGTAAACAG
AGCCAGATTAAGAATGTGATTTATGAGCGCTTAATAAAGGTCATAATAAAAATCCTAAGT
GAAACAGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTGGGCAAGTGGGTACTTTTTAGCTCCTCTCCAAAGGAAGAGGTTTTAAAACCAAGT
CAGAGGAAGAAAAATGCCAGTGACAGCTGAAAGTTAACGTGGCGTAAATACCAAGTTCCC
TGGGTCAGCGCCCTAAGGACCATGCTGAGCTCCCTGGGTACTCGGCTTCCACAGTCATCT
CTTAATCTTCTGTCCTCCTGGCAAATTTGAAAATTCAAAAAACCAAGCAGCTTGACAGCA
AGTGCCACGTCCCTCTGGCCTCATTGTCCTCTGCGCACTTCATCCCGCTGGCCAGAAGGA
AGGCGCTGCTCGTCAGTAACTGAACAGGGGATGCCGACGGAGAAAACTGGAGTCCCCAGC
TCCGCACCAAATAAGAGATTTTCCAGTTGGTAGTGACCTGCCCCTCTTGCAGTTGAAAGT
AAGTCCGCTTGGGCCTATGCTGCACCCTCCACGTCTGGCCTTTGGCTCTTGGTGAGGCTT
GGCCTGATGTGTTTAAATAACGGCCCCAGGTTTGAGCCACGGCAGGTACAGGGCTGATAC
TTTCCCGGCTTGCTGCTCTCAGCCGCTCTCCGGAGCCGTCCCCCCAGCAGCTCCTCCACG
ACGCCCGTCGAATGCTGTTATGCTGAAGGATGAGGGAGGACGTGGAAAAGAAGTGCCATT
TCTGCTGCTGCTGCTTCAGAGGCCACCCTGTTCTGGATGAGACATGGGGAGATGGTCAGA
CAGCCTGCAACACTGACGTGACTGTTGTGTAAAAACGCTGCGTAATCCTCAATGTATATT
TATATATTTTTATTTTTTATAACTTTAGGGGAATGGGTGGAGGGGAAAAGTAGTAAACAG
AGCCAGATTAAGAATGTGATTTATGAGCGCTTAATAAAGGTCATAATAAAAATCCTAAGT
GAAACAGAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-884, gnl|bosTau2|chr23 (13412834-13411960)
               

               
               1-884, gnl|Hg17|chr6 (42155103-42156585)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-884, gnl|bosTau2|chr23 (13412834-13411960)
               

               
               1-884, gnl|Hg17|chr6 (42155103-42156585)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               cut (0.509771)
               

               
               cmu (0.372787)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               cmu (0.372787)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

	1-884, gnl\|bosTau2\|chr23 (13412834-13411960)
	1-884, gnl\|Hg17\|chr6 (42155103-42156585)

	cut (0.509771)
	cmu (0.372787)
	sto (0.179824)
	sin (0.174948)
	cje (0.165235)
	cki (0.165235)
	fat (0.147427)
	liv (0.146284)
	cst (0.140036)
	lyg (0.133103)
	ova (0.129132)