Non-Coding RNA Search

Ss1.1-rfat0120_o2.5

Sequence:


               
               TTACCATTGCTGTAACTGACCTAAGTGGTGGAGCTACAAGCATGTCATAGCATTTCTGTG
TTTGTTAATGCACGATGATGATTATAACTGTTCTTGGGAAAGGTACTATGGTTTGCATAT
GTCAGTATTTGTGGGACTTTCTTTAGAATGATGAAAGTTGCTAGGTATGTGCTAGGTTGA
TGCAGGTAATCCTTAGGCTCACAGTAAATCCATGCTATTCAAAACCAGTCTATATTTGGA
GATAAAAAGATAGGTTTAATGAGGACCTCAGGAACAATGGAATTTTGTTTCAGACACAGG
CCACTCAGTGTACCAGAATGATGGTCAGAATAACATTGTCTGGTTTTTAAATTGGACATT
GCTCATTTCTGTTATAATTTACTGTTCAGGATTTCATTTTTTTTTTTTTTAAAGGTCATG
TCTTTAAGCTGAAAAGCCTTTAAAGAAGGAAGTGGAATCACGTATTTAACAGGATATTTA
AAACTAAGGAGTTCTAATTACTTCACATATATTGAATATAAGTTGTTAACCAATTCTACA
ACTAAACAATAACTTGGTACTTCTGATTTGCAAAGTGATTGCTGCAGAATATTTTCTAAG
GTAGCTGAAAATTTAAAATAGATAATCAGTATAATCTCTTGATAACTGGTATCTCAGATC
ACTTGTATATCTGAGAAAATAAAAGATTATGTTTTAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCATTGCTGTAACTGACCTAAGTGGTGGAGCTACAAGCATGTCATAGCATTTCTGTG
TTTGTTAATGCACGATGATGATTATAACTGTTCTTGGGAAAGGTACTATGGTTTGCATAT
GTCAGTATTTGTGGGACTTTCTTTAGAATGATGAAAGTTGCTAGGTATGTGCTAGGTTGA
TGCAGGTAATCCTTAGGCTCACAGTAAATCCATGCTATTCAAAACCAGTCTATATTTGGA
GATAAAAAGATAGGTTTAATGAGGACCTCAGGAACAATGGAATTTTGTTTCAGACACAGG
CCACTCAGTGTACCAGAATGATGGTCAGAATAACATTGTCTGGTTTTTAAATTGGACATT
GCTCATTTCTGTTATAATTTACTGTTCAGGATTTCATTTTTTTTTTTTTTAAAGGTCATG
TCTTTAAGCTGAAAAGCCTTTAAAGAAGGAAGTGGAATCACGTATTTAACAGGATATTTA
AAACTAAGGAGTTCTAATTACTTCACATATATTGAATATAAGTTGTTAACCAATTCTACA
ACTAAACAATAACTTGGTACTTCTGATTTGCAAAGTGATTGCTGCAGAATATTTTCTAAG
GTAGCTGAAAATTTAAAATAGATAATCAGTATAATCTCTTGATAACTGGTATCTCAGATC
ACTTGTATATCTGAGAAAATAAAAGATTATGTTTTAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-279, gnl|bosTau2|chr14 (45722965-45723241)
               

               
               1-279, gnl|canFam2|chr29 (38989922-38990413)
               

               
               1-279, gnl|echTel1|scaffold_139318 (361-810)
               

               
               1-279, gnl|hg17|chr8 (91703541-91704012)
               

               
               1-279, gnl|Hg17|chr8 (91704104-91703843)
               

               
               1-279, gnl|loxAfr1|scaffold_20525 (1501-1979)
               

               
               1-279, gnl|mm7|chr4 (15213758-15213281)
               

               
               1-279, gnl|Mm7|chr4 (15213200-15213453)
               

               
               1-279, gnl|oryCun1|scaffold_199504 (19232-19709)
               

               
               1-279, gnl|panTro1|chr7 (93907570-93908042)
               

               
               1-279, gnl|rheMac2|chr8 (93276734-93277208)
               

               
               1-279, gnl|rn3|chr5 (29807135-29806674)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-279, gnl|bosTau2|chr14 (45722965-45723241)
               

               
               1-279, gnl|canFam2|chr29 (38989922-38990413)
               

               
               1-279, gnl|echTel1|scaffold_139318 (361-810)
               

               
               1-279, gnl|hg17|chr8 (91703541-91704012)
               

               
               1-279, gnl|Hg17|chr8 (91704104-91703843)
               

               
               1-279, gnl|loxAfr1|scaffold_20525 (1501-1979)
               

               
               1-279, gnl|mm7|chr4 (15213758-15213281)
               

               
               1-279, gnl|Mm7|chr4 (15213200-15213453)
               

               
               1-279, gnl|oryCun1|scaffold_199504 (19232-19709)
               

               
               1-279, gnl|panTro1|chr7 (93907570-93908042)
               

               
               1-279, gnl|rheMac2|chr8 (93276734-93277208)
               

               
               1-279, gnl|rn3|chr5 (29807135-29806674)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fat (0.147427)
               

               
               kid (0.129735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fat (0.147427)
               

               
               kid (0.129735)

	1-279, gnl\|bosTau2\|chr14 (45722965-45723241)
	1-279, gnl\|canFam2\|chr29 (38989922-38990413)
	1-279, gnl\|echTel1\|scaffold_139318 (361-810)
	1-279, gnl\|hg17\|chr8 (91703541-91704012)
	1-279, gnl\|Hg17\|chr8 (91704104-91703843)
	1-279, gnl\|loxAfr1\|scaffold_20525 (1501-1979)
	1-279, gnl\|mm7\|chr4 (15213758-15213281)
	1-279, gnl\|Mm7\|chr4 (15213200-15213453)
	1-279, gnl\|oryCun1\|scaffold_199504 (19232-19709)
	1-279, gnl\|panTro1\|chr7 (93907570-93908042)
	1-279, gnl\|rheMac2\|chr8 (93276734-93277208)
	1-279, gnl\|rn3\|chr5 (29807135-29806674)

	bfe (0.299715)
	fce (0.271592)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	fat (0.147427)
	kid (0.129735)