Non-Coding RNA Search

Ss1.1-rfat0120_p7.5

Sequence:


               
               GACAAGTCAGCATAAATAAAGAATGACAAGGCAGCAGCAAGAGCTTCAACTACAGAGAAG
TGAAGGCATAAGATACTATGGTGATAGTGAGCAACTTTCCAAAAGCTAGTTAAATCTGCT
TATTACAACTGATTTGGAGGTGGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGA
AATTATAGTGGACAACAACAATCAAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGA
AGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATAT
GGTAGCAGAAGGTTCTAAAAACTCAGCAGAAAAGGGTTGAATGAGAACCCTACTTGCCTA
AATGAGGAATGTCTTTCCTACCATCTTAAATACGAAGGTTTCTGGCTGGGTAAGGTTTGT
AGCTCACAGTAAAGCCTGATGACACCATTTGTTTCCCTATAAATTTATATTACATATTTT
CAAACTATTAGGTACATTGGCAAAAAAAAGCTTTAAAATTTTACCTGCAATAACCATGAG
CATTCATCTAGAGTCAGAGATAATTCATTGTTGGTGTCTCTAGGGTGAAGTCAAGAGAAA
GAGTGACCAGATTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAGTCAGCATAAATAAAGAATGACAAGGCAGCAGCAAGAGCTTCAACTACAGAGAAG
TGAAGGCATAAGATACTATGGTGATAGTGAGCAACTTTCCAAAAGCTAGTTAAATCTGCT
TATTACAACTGATTTGGAGGTGGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGA
AATTATAGTGGACAACAACAATCAAATTATGGACCCATGAAGGGGGGCAGTTTTGGTGGA
AGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATAT
GGTAGCAGAAGGTTCTAAAAACTCAGCAGAAAAGGGTTGAATGAGAACCCTACTTGCCTA
AATGAGGAATGTCTTTCCTACCATCTTAAATACGAAGGTTTCTGGCTGGGTAAGGTTTGT
AGCTCACAGTAAAGCCTGATGACACCATTTGTTTCCCTATAAATTTATATTACATATTTT
CAAACTATTAGGTACATTGGCAAAAAAAAGCTTTAAAATTTTACCTGCAATAACCATGAG
CATTCATCTAGAGTCAGAGATAATTCATTGTTGGTGTCTCTAGGGTGAAGTCAAGAGAAA
GAGTGACCAGATTTTTTTTTTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               139-335, gnl|bosTau2|chr23 (18992223-18992420)
               

               
               139-335, gnl|Hg17|chr13 (65260247-65260050)
               

               
               139-335, gnl|Mm7|chrX (75844282-75844476)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-335, gnl|bosTau2|chr23 (18992223-18992420)
               

               
               139-335, gnl|Hg17|chr13 (65260247-65260050)
               

               
               139-335, gnl|Mm7|chrX (75844282-75844476)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               cbr (0.127975)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               cbr (0.127975)

	139-335, gnl\|bosTau2\|chr23 (18992223-18992420)
	139-335, gnl\|Hg17\|chr13 (65260247-65260050)
	139-335, gnl\|Mm7\|chrX (75844282-75844476)

	spl (0.286369)
	mgp (0.230681)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	che (0.136314)
	cbr (0.127975)