Non-Coding RNA Search

Ss1.1-rfat0122_e11.5

Sequence:


               
               GATGGGAAGATCAGGCTTCTGCCAGCCTGGCCCCGGGGCCAGCGGGAAAGAACGGTACTT
TCCCGGAGGACAGACGGGGAAGGAATGGGGCATCCTGGTCCCAGTCGAGCACGCTGCCCT
TGGGGAGCCCATCACCAGATGGACTCTTGTTTGCTGACGACTCCTCAGAAGACTCAGAAG
TCCTCAAGTGAGGGGAGTTGAGACCTTCCCCCACCAAGGAAATTCCACCTTAACAGAATC
CACGGACGCTTGATATTTGGGGTATTTGTCTCCCTTACCAGGGAAACGCCACAGCCCGAA
AGCACCACGTGAATGTTGCCAAGTACGTCATCATTTAAAATACGTAATATATATTTATTT
AAAGAGAAAATATCTATATGTATATGGTGGAAAGAGACGAAGATATTCTATTTTAATAAA
AGATGACATATCTCCTGTCACTTATCTTACAGATCTTAAAATTTAAGCTCTAACAGCCTC
ATCTCTACGACAGTCCCTGGATGTTAACATTTGCCCAAAGTTGTTTTTCTTAAAGTTCTC
TTTCTTTTTCATGACTGTTAAATATTTGTAAAATGAAATGCCATGTTTGACTTTGCTTCT
GGTCTTAAGAAAAATCTGATGTTCTCCCACGGATCATCTATTTGTTAAGAATGATTCATT
TCGTACTTAAAGGTGCATGACTGATTCATCCTCCAATATGGCTTCCTAATAAAATGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGGAAGATCAGGCTTCTGCCAGCCTGGCCCCGGGGCCAGCGGGAAAGAACGGTACTT
TCCCGGAGGACAGACGGGGAAGGAATGGGGCATCCTGGTCCCAGTCGAGCACGCTGCCCT
TGGGGAGCCCATCACCAGATGGACTCTTGTTTGCTGACGACTCCTCAGAAGACTCAGAAG
TCCTCAAGTGAGGGGAGTTGAGACCTTCCCCCACCAAGGAAATTCCACCTTAACAGAATC
CACGGACGCTTGATATTTGGGGTATTTGTCTCCCTTACCAGGGAAACGCCACAGCCCGAA
AGCACCACGTGAATGTTGCCAAGTACGTCATCATTTAAAATACGTAATATATATTTATTT
AAAGAGAAAATATCTATATGTATATGGTGGAAAGAGACGAAGATATTCTATTTTAATAAA
AGATGACATATCTCCTGTCACTTATCTTACAGATCTTAAAATTTAAGCTCTAACAGCCTC
ATCTCTACGACAGTCCCTGGATGTTAACATTTGCCCAAAGTTGTTTTTCTTAAAGTTCTC
TTTCTTTTTCATGACTGTTAAATATTTGTAAAATGAAATGCCATGTTTGACTTTGCTTCT
GGTCTTAAGAAAAATCTGATGTTCTCCCACGGATCATCTATTTGTTAAGAATGATTCATT
TCGTACTTAAAGGTGCATGACTGATTCATCCTCCAATATGGCTTCCTAATAAAATGTGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr11 (1989849-1990574)
               

               
               1-720, gnl|Hg17|chr2 (112502482-112503168)
               

               
               1-720, gnl|Mm7|chr2 (128542330-128544008)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr11 (1989849-1990574)
               

               
               1-720, gnl|Hg17|chr2 (112502482-112503168)
               

               
               1-720, gnl|Mm7|chr2 (128542330-128544008)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	1-720, gnl\|bosTau2\|chr11 (1989849-1990574)
	1-720, gnl\|Hg17\|chr2 (112502482-112503168)
	1-720, gnl\|Mm7\|chr2 (128542330-128544008)

	mcp (0.170648)
	fat (0.147427)
	lnt (0.142308)
	thg (0.126791)
	bla (0.124347)