Non-Coding RNA Search

Ss1.1-rfat0122_k3.5

Sequence:


               
               GAGCTTTGAGCCGTATTCCGGGCGCTGGCTCCTGCAATAGCCTTCCGCGGCGACGCAGCG
ACCGGGTCACACGGAGGTGGAGCGCGGGATTTGAGGAAGCATGGATATTGATGCCTCTGA
AGAAGATCCTGAAATGAAGAAATCTTCTGCTGTCTGTGTTGGCAGAGAAGAAGACATTAA
AAAATCTGAAAGAATGACAGCTATTGTTCATGATAGAGAAGTGGTCATTTTCTACCACAA
AGGAGAATATCATGCTATGGATATTCGCTGTTACCGAATTTGATGGACGACCATGTATAG
TTTGCCCCTGGCATAAATACAAAATTACTCTGGCAACAGGAGAAGGACTGTATCAGTCTA
TAGACCCTAAAGACCCAGCAGCAAAACCCAAGTGGTGCTCCAAAGGAATAAAGCAAAGGA
TCCATATAGTGACAGTGGACAATGGGAATATCTATGTGACCCTTTCTAATGAGCCTTTTA
AGTGTGACTCGGATTTTTATGCCACTGGAGTCTTCAAAGTAATTAAAAGTTCTTCCTAAT
AAAGTTTTCTAGCAATTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTTTGAGCCGTATTCCGGGCGCTGGCTCCTGCAATAGCCTTCCGCGGCGACGCAGCG
ACCGGGTCACACGGAGGTGGAGCGCGGGATTTGAGGAAGCATGGATATTGATGCCTCTGA
AGAAGATCCTGAAATGAAGAAATCTTCTGCTGTCTGTGTTGGCAGAGAAGAAGACATTAA
AAAATCTGAAAGAATGACAGCTATTGTTCATGATAGAGAAGTGGTCATTTTCTACCACAA
AGGAGAATATCATGCTATGGATATTCGCTGTTACCGAATTTGATGGACGACCATGTATAG
TTTGCCCCTGGCATAAATACAAAATTACTCTGGCAACAGGAGAAGGACTGTATCAGTCTA
TAGACCCTAAAGACCCAGCAGCAAAACCCAAGTGGTGCTCCAAAGGAATAAAGCAAAGGA
TCCATATAGTGACAGTGGACAATGGGAATATCTATGTGACCCTTTCTAATGAGCCTTTTA
AGTGTGACTCGGATTTTTATGCCACTGGAGTCTTCAAAGTAATTAAAAGTTCTTCCTAAT
AAAGTTTTCTAGCAATTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28603828|ref|NP_775498.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28603828|ref|NP_775498.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               276-562, gnl|bosTau2|chr26 (31813202-31812916)
               

               
               276-562, gnl|Hg17|chr5 (95017506-95017793)
               

               
               276-562, gnl|Mm7|chr13 (73014692-73014391)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-562, gnl|bosTau2|chr26 (31813202-31812916)
               

               
               276-562, gnl|Hg17|chr5 (95017506-95017793)
               

               
               276-562, gnl|Mm7|chr13 (73014692-73014391)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               sin (0.524843)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	276-562, gnl\|bosTau2\|chr26 (31813202-31812916)
	276-562, gnl\|Hg17\|chr5 (95017506-95017793)
	276-562, gnl\|Mm7\|chr13 (73014692-73014391)

	sin (0.524843)
	sme (0.305437)
	cbe (0.239234)
	hea (0.204499)
	nbm (0.198649)
	sag (0.182715)
	duo (0.172801)
	eye (0.170503)
	cje (0.165235)
	fat (0.147427)
	che (0.136314)
	ssp (0.13552)
	nmm (0.132802)
	sug (0.127291)
	bla (0.124347)
	jej (0.0989218)