Non-Coding RNA Search

Ss1.1-rfat0122_m21.5

Sequence:


               
               CTCTAAATTGAGGGGATTAAAAAGAATTTAAAATAATTTTGAACGAATTTATTTTCCCCT
CAGTTTTTGAGGGCATTTAAAAGGCATTAAATCAAGACAAATCATGTGCTTGAGGAAAAA
AAAAAAAATGAATGAAAACACAGCACTTATGTTGATTTAGCTGCAGCCTCCTTGGAGGTA
GAATTTATTTATTTAAAATTACTGGTTGCATCAAGAACCCATAGGGTGTACAAAAGGTTC
TATAAAATCTGCATTCTAGAGACAAAGAGGCAGGCAAATCCATGTCACAAGGGTGAAGCT
TACAGTTTACAAACTGGGAACGCCAGGGTGTAGGATATAAAAAATGCACTCTTGAGAAAA
CAATGTAATCAGGGTGCTGAATACTTGCATGGTGCTTTCAGACATTAGCCTTGTTCAACA
AATTTCTTGTATTGACAGATCTGTAGTGTGCATGGGCAGACACATTTTGCCTCTATGTCT
CTTAAAATTTTAATTAAAAATACTCTTTCCAGTAATCCTAATTTGCACGAAGATATAATG
TCCACATGACGTGCCTTGCCTTGAAATCTAAAAAACAAAAAACAAAAAAAAACAACAAAA
AACCACAAAAAAGTGACATCACTACACTTGTTTTGCTGCATTTATTATCATTTTAGATCT
TTACCATTTTTATGACAAAATATTTTGTACTCCAGACGAAGAAAAATGTGTGACATCATG
GATTTTTTAGACAGTTATACCTTTATCTCACATTTATAAAGCATATCATGGCTGTGTATA
GTTGCCGCTTAAAAATTGTAATCGACCAGCAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAAATTGAGGGGATTAAAAAGAATTTAAAATAATTTTGAACGAATTTATTTTCCCCT
CAGTTTTTGAGGGCATTTAAAAGGCATTAAATCAAGACAAATCATGTGCTTGAGGAAAAA
AAAAAAAATGAATGAAAACACAGCACTTATGTTGATTTAGCTGCAGCCTCCTTGGAGGTA
GAATTTATTTATTTAAAATTACTGGTTGCATCAAGAACCCATAGGGTGTACAAAAGGTTC
TATAAAATCTGCATTCTAGAGACAAAGAGGCAGGCAAATCCATGTCACAAGGGTGAAGCT
TACAGTTTACAAACTGGGAACGCCAGGGTGTAGGATATAAAAAATGCACTCTTGAGAAAA
CAATGTAATCAGGGTGCTGAATACTTGCATGGTGCTTTCAGACATTAGCCTTGTTCAACA
AATTTCTTGTATTGACAGATCTGTAGTGTGCATGGGCAGACACATTTTGCCTCTATGTCT
CTTAAAATTTTAATTAAAAATACTCTTTCCAGTAATCCTAATTTGCACGAAGATATAATG
TCCACATGACGTGCCTTGCCTTGAAATCTAAAAAACAAAAAACAAAAAAAAACAACAAAA
AACCACAAAAAAGTGACATCACTACACTTGTTTTGCTGCATTTATTATCATTTTAGATCT
TTACCATTTTTATGACAAAATATTTTGTACTCCAGACGAAGAAAAATGTGTGACATCATG
GATTTTTTAGACAGTTATACCTTTATCTCACATTTATAAAGCATATCATGGCTGTGTATA
GTTGCCGCTTAAAAATTGTAATCGACCAGCAATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-185, + strand, RNAz p=0.98681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-185, + strand, RNAz p=0.98681

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-814, gnl|bosTau2|chr6 (66613563-66612745)
               

               
               1-814, gnl|Hg17|chr9 (14077371-14076561)
               

               
               1-814, gnl|Mm7|chr4 (81699574-81698755)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-814, gnl|bosTau2|chr6 (66613563-66612745)
               

               
               1-814, gnl|Hg17|chr9 (14077371-14076561)
               

               
               1-814, gnl|Mm7|chr4 (81699574-81698755)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.147427)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	1-814, gnl\|bosTau2\|chr6 (66613563-66612745)
	1-814, gnl\|Hg17\|chr9 (14077371-14076561)
	1-814, gnl\|Mm7\|chr4 (81699574-81698755)