Non-Coding RNA Search

Ss1.1-rfat0123_e18.5

Sequence:


               
               TCACAATTTTAAAGTTATGTATTTCTGTGATTATATCTTGAAAACTCATGTTCCCCACTA
AACTAATATATAGTGACTGTTTTCTTCAATGCTGTATGTACCCAGTAGGTAGTAAATAGT
AGGTGCTCAATATATCTGTTGAATTAATTTAATTATCTCAATCCTGTCTTATCCAAATGG
CTTTCTACCATTTGCTGATAGTACTACCAGCTGGAGTACCAAGTGTGAAGTGATAAAAGC
TAAAATTAGAGGACCAAACCAGGGCTAATTCGTTCTGTCATGTCAAATAATTTGAAATTT
TTTTTAAATCTTAAAGGTCCTAGGGAGCCATTGATCTAATACATTTTCAGTCAAGATGTC
TTCCAGGTTCCTGGCATGAGCCATGAATGGATGGTGGGGCTAATTACTGGAGTGGGAAAA
GGAAGAAGGGGAGTTCGTAAAAATAACATGGAAGCTGGTTAGAGGGCAGAAGATGAAAGC
TAATGATTTCTGCCTTTGAAAATGTGGAGCTTGGACATGTGTGACATTCAGGTAGAAATA
TCCAGTGGGTAATGATAGGGAATCTGGAAGGGAGATCCAGGCTGGAAGAGAGACGAGAGT
CACCAGCCTTTAGGTGGTAATTCAGCCCATGGAGTGGCAGTCACCCAGAGAGATGCCAGA
GTGAGAAAAGGACTGAGGACAGAACTCGTAGGTCCATCAAGCTTTAGGAGGGTAGAGACA
CAGAAGTTGGCAAAGGAGAATGAGAAGGAGCTCCCTGACAGGCAGGAGAAATACCGAAAG
TCCATGATGTAGAAATCAAGGAAGAAAAAATTCAAGGAAATAGAAGTAGTCAAGAGCAGA
GAGAAGTTGGTGAAAAAAAAGGTTGTGGAAAACAAGTCCACTGGATTTAGCAATAAGGAA
GTAATTGGTAACATTGAGCATTTTCAGTGAAGTAGTGGGAGCAAAATGTGAACTGCGGTG
GGTTAAGGACTGGGAAGTGAGATAGTTATCAGGAGCAGACTGCCTTCCCAGTTCATTGGG
CTGTAGAGAGAAAGAAGAGAAGAAAGAGGAGATGGGCTTAAGAAAGCAATATTTTTTTAA
ATGTCAATATAATAAACTATGAATAAATCATAAAAGTAAATGACTGCTAAAAAAAATAAC
CCCACTATTCACCCATTTGGAAATACACAACAGAAAACATTCATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAATTTTAAAGTTATGTATTTCTGTGATTATATCTTGAAAACTCATGTTCCCCACTA
AACTAATATATAGTGACTGTTTTCTTCAATGCTGTATGTACCCAGTAGGTAGTAAATAGT
AGGTGCTCAATATATCTGTTGAATTAATTTAATTATCTCAATCCTGTCTTATCCAAATGG
CTTTCTACCATTTGCTGATAGTACTACCAGCTGGAGTACCAAGTGTGAAGTGATAAAAGC
TAAAATTAGAGGACCAAACCAGGGCTAATTCGTTCTGTCATGTCAAATAATTTGAAATTT
TTTTTAAATCTTAAAGGTCCTAGGGAGCCATTGATCTAATACATTTTCAGTCAAGATGTC
TTCCAGGTTCCTGGCATGAGCCATGAATGGATGGTGGGGCTAATTACTGGAGTGGGAAAA
GGAAGAAGGGGAGTTCGTAAAAATAACATGGAAGCTGGTTAGAGGGCAGAAGATGAAAGC
TAATGATTTCTGCCTTTGAAAATGTGGAGCTTGGACATGTGTGACATTCAGGTAGAAATA
TCCAGTGGGTAATGATAGGGAATCTGGAAGGGAGATCCAGGCTGGAAGAGAGACGAGAGT
CACCAGCCTTTAGGTGGTAATTCAGCCCATGGAGTGGCAGTCACCCAGAGAGATGCCAGA
GTGAGAAAAGGACTGAGGACAGAACTCGTAGGTCCATCAAGCTTTAGGAGGGTAGAGACA
CAGAAGTTGGCAAAGGAGAATGAGAAGGAGCTCCCTGACAGGCAGGAGAAATACCGAAAG
TCCATGATGTAGAAATCAAGGAAGAAAAAATTCAAGGAAATAGAAGTAGTCAAGAGCAGA
GAGAAGTTGGTGAAAAAAAAGGTTGTGGAAAACAAGTCCACTGGATTTAGCAATAAGGAA
GTAATTGGTAACATTGAGCATTTTCAGTGAAGTAGTGGGAGCAAAATGTGAACTGCGGTG
GGTTAAGGACTGGGAAGTGAGATAGTTATCAGGAGCAGACTGCCTTCCCAGTTCATTGGG
CTGTAGAGAGAAAGAAGAGAAGAAAGAGGAGATGGGCTTAAGAAAGCAATATTTTTTTAA
ATGTCAATATAATAAACTATGAATAAATCATAAAAGTAAATGACTGCTAAAAAAAATAAC
CCCACTATTCACCCATTTGGAAATACACAACAGAAAACATTCATCTCT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-117, gnl|bosTau2|chr11 (49493988-49493876)
               


               
               483-1186, gnl|bosTau2|chr11 (49493752-49493056)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-117, gnl|bosTau2|chr11 (49493988-49493876)
               


               
               483-1186, gnl|bosTau2|chr11 (49493752-49493056)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               fhi (0.339155)
               

               
               ute (0.265569)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fhi (0.339155)
               

               
               ute (0.265569)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	1-117, gnl\|bosTau2\|chr11 (49493988-49493876)

	483-1186, gnl\|bosTau2\|chr11 (49493752-49493056)

	pro (0.512033)
	fhi (0.339155)
	ute (0.265569)
	bla (0.248694)
	cbe (0.239234)
	fcc (0.197785)
	sag (0.182715)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	mga (0.160205)
	fat (0.147427)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	cty (0.10408)