Non-Coding RNA Search

Ss1.1-rfat0123_k10.5

Sequence:


               
               GCTGCATCTGCGACCCACACCACAGGCCATAGCAATGCCAGATCCTTAACCCACTGAGCG
AGGCCGGGGATCAAACCTGCAACCTCATGGTTCCTGGTCAGATTCATTAACCACTGAGCC
ACGATGGGAACTCCATGATAAATATTTATGATTTAACATTTAAAAAGTCCGAAAATATCC
TTCTTCTATCATTTTTTATTGAAAATGATCAGATGTTTCTTGAGAGACTGACATAACATG
AAAGAATTAGCAAGAATTAAGACTTCTTTATTCTGTTGCCAAAATTACTCAAAAAGCTCT
CAACAGAAAATTGCTTGTAATTTTCAGCTTTTGGAACAAACTATTTATGAAGCATGAACT
AAGAAGCAGATGATATTAAGCTCAAGGTTGTGTTATCTTTGAGACTGGGCTTTCTGCCTC
ATTGTGCCAGAGTAGCACATGCACTTATAATGCACCTTTGGTGTATATTGTAAAATAAAT
TTCCTTTTTATGCACTTTAGTATTAGAGTCCAGCATGAATTAATATTTTCCTTTAAAGAT
GATTTATTTCAAAATATTTCAGTGTATTTATCACTAGAATTATGTTACTCTTCTTACTAA
CAATTTTCTTTTTAAAAATTAAATTTACCTTGTATATATAATTCTGTCATAAAAGTTGTT
TTTCTATTAAAATTGTAAGAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCATCTGCGACCCACACCACAGGCCATAGCAATGCCAGATCCTTAACCCACTGAGCG
AGGCCGGGGATCAAACCTGCAACCTCATGGTTCCTGGTCAGATTCATTAACCACTGAGCC
ACGATGGGAACTCCATGATAAATATTTATGATTTAACATTTAAAAAGTCCGAAAATATCC
TTCTTCTATCATTTTTTATTGAAAATGATCAGATGTTTCTTGAGAGACTGACATAACATG
AAAGAATTAGCAAGAATTAAGACTTCTTTATTCTGTTGCCAAAATTACTCAAAAAGCTCT
CAACAGAAAATTGCTTGTAATTTTCAGCTTTTGGAACAAACTATTTATGAAGCATGAACT
AAGAAGCAGATGATATTAAGCTCAAGGTTGTGTTATCTTTGAGACTGGGCTTTCTGCCTC
ATTGTGCCAGAGTAGCACATGCACTTATAATGCACCTTTGGTGTATATTGTAAAATAAAT
TTCCTTTTTATGCACTTTAGTATTAGAGTCCAGCATGAATTAATATTTTCCTTTAAAGAT
GATTTATTTCAAAATATTTCAGTGTATTTATCACTAGAATTATGTTACTCTTCTTACTAA
CAATTTTCTTTTTAAAAATTAAATTTACCTTGTATATATAATTCTGTCATAAAAGTTGTT
TTTCTATTAAAATTGTAAGAATTT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               138-678, gnl|bosTau2|chr24 (31087206-31086665)
               

               
               138-678, gnl|Hg17|chr18 (12661085-12659642)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-678, gnl|bosTau2|chr24 (31087206-31086665)
               

               
               138-678, gnl|Hg17|chr18 (12661085-12659642)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	138-678, gnl\|bosTau2\|chr24 (31087206-31086665)
	138-678, gnl\|Hg17\|chr18 (12661085-12659642)

	cbe (0.239234)
	nms (0.213858)
	sin (0.174948)
	fat (0.147427)
	liv (0.146284)
	med (0.116252)
	cty (0.10408)