Non-Coding RNA Search

Ss1.1-rfat0124_g8.5

Sequence:


               
               TGCAGGAAAACATTGCTGATAGCCCAACTCCACCACCACCACCTCCACCAGATGACATTC
CCATGTTTGATGATTCTCCTCCGCCACCGCCACCACCTCCAGTGGATTATGAAGATGAGG
AAGCTGCAGTAGTTCAGTATAATGATCCATATGCAGACGGGGATCCTGCTTGGGCCCCTA
AGAATTATATTGAGAAAGTTGTGGCAATATATGATTATACAAAAGACAAGGATGATGAGC
TCTCATTTATGGAGGGTGCCATCATCTACGTCATAAAGAAGAACGACGATGGCTGGTATG
AAGGAGTCTGCAATCGAGTGACTGGTCTGTTCCCTGGGAACTATGTTGAATCAATCATGC
ACTATACCGATTAAATTTTTGCTTTTAAAAGTAGGTTCTTATTATCAGTCATACTGTGGG
ACTATTATGGTTAACAGAATTGTCTTAAAAGTTTTAAAATGTGCCCATATTTTCAGGACA
TGCTGTTCTATTGGTATAATGGAATGTCTACCTATAAGCATAAATCTCTGAGGCAGTTTG
TGTATTGCTAAACAGCAATCTATACAGGAGGCTGTCGTAACTGATTATGCTCATATACTT
ACTTACACATTGTTAACTCTATGACCAGCCTAAATATTCTGGGGGTGTGGGGTATAATAT
TTAACAAATCATGATTCAGATTGTGCCATTACATGTTTCAGTGCAGCATGGTTACTAACG
CTCTGTCAGACTAATATTAAAATCAGAAAACTTAAATGCTGGTGCTGGTCATACTTTTTG
TTTAGACTCTCTCATTCTTGAAATATACTGTTTGTTTAAAGCATGCATACAAATTTATGT
ATTGAAATATACTTTAAAAAATCCAAGATGCTTCCAATTTGTGTAATATTTACTTGGAGT
ACTCGTACTTAGGTCTCTTGAAATGAAGTGAGTCTCTAAGGTCTCCATGTGAAACAAAAT
AAACAAAAAAAGGGTTATCTGTAATGTTGTAATTTGTACCTAATTTTTTAAATGAGTGAA
TTTGCATTATAGATTTTTTCCATTCATAAATACATGAGTGAATCAAAGGTTTTTGTCCTT
TCCTTCACTGGTTTGCTTTAAAAATTAATAAATAAAAGATGCTGATTTATTGTAAAAAAA
GGTTCTATTTTCTCAATGTATTAACTTGGAAAAAAAATTTTAGCCTTATCTATCCCAACC
TATCCCAATAGCAGTGGCTGAGTTTTGCAGATTTAAAACTGAGATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGAAAACATTGCTGATAGCCCAACTCCACCACCACCACCTCCACCAGATGACATTC
CCATGTTTGATGATTCTCCTCCGCCACCGCCACCACCTCCAGTGGATTATGAAGATGAGG
AAGCTGCAGTAGTTCAGTATAATGATCCATATGCAGACGGGGATCCTGCTTGGGCCCCTA
AGAATTATATTGAGAAAGTTGTGGCAATATATGATTATACAAAAGACAAGGATGATGAGC
TCTCATTTATGGAGGGTGCCATCATCTACGTCATAAAGAAGAACGACGATGGCTGGTATG
AAGGAGTCTGCAATCGAGTGACTGGTCTGTTCCCTGGGAACTATGTTGAATCAATCATGC
ACTATACCGATTAAATTTTTGCTTTTAAAAGTAGGTTCTTATTATCAGTCATACTGTGGG
ACTATTATGGTTAACAGAATTGTCTTAAAAGTTTTAAAATGTGCCCATATTTTCAGGACA
TGCTGTTCTATTGGTATAATGGAATGTCTACCTATAAGCATAAATCTCTGAGGCAGTTTG
TGTATTGCTAAACAGCAATCTATACAGGAGGCTGTCGTAACTGATTATGCTCATATACTT
ACTTACACATTGTTAACTCTATGACCAGCCTAAATATTCTGGGGGTGTGGGGTATAATAT
TTAACAAATCATGATTCAGATTGTGCCATTACATGTTTCAGTGCAGCATGGTTACTAACG
CTCTGTCAGACTAATATTAAAATCAGAAAACTTAAATGCTGGTGCTGGTCATACTTTTTG
TTTAGACTCTCTCATTCTTGAAATATACTGTTTGTTTAAAGCATGCATACAAATTTATGT
ATTGAAATATACTTTAAAAAATCCAAGATGCTTCCAATTTGTGTAATATTTACTTGGAGT
ACTCGTACTTAGGTCTCTTGAAATGAAGTGAGTCTCTAAGGTCTCCATGTGAAACAAAAT
AAACAAAAAAAGGGTTATCTGTAATGTTGTAATTTGTACCTAATTTTTTAAATGAGTGAA
TTTGCATTATAGATTTTTTCCATTCATAAATACATGAGTGAATCAAAGGTTTTTGTCCTT
TCCTTCACTGGTTTGCTTTAAAAATTAATAAATAAAAGATGCTGATTTATTGTAAAAAAA
GGTTCTATTTTCTCAATGTATTAACTTGGAAAAAAAATTTTAGCCTTATCTATCCCAACC
TATCCCAATAGCAGTGGCTGAGTTTTGCAGATTTAAAACTGAGATGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61879647|ref|XP_613271.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879647|ref|XP_613271.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               469-627, - strand, RNAz p=0.952961
               

               
               984-1100, - strand, RNAz p=0.659834

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-627, - strand, RNAz p=0.952961
               

               
               984-1100, - strand, RNAz p=0.659834

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               197-1246, gnl|bosTau2|chr13 (9262027-9260988)
               

               
               197-1246, gnl|Hg17|chr10 (27077682-27076638)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-1246, gnl|bosTau2|chr13 (9262027-9260988)
               

               
               197-1246, gnl|Hg17|chr10 (27077682-27076638)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               liv (0.585137)
               

               
               fco (0.471624)
               

               
               fat (0.442282)
               

               
               sag (0.36543)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               thg (0.253582)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               fco (0.471624)
               

               
               fat (0.442282)
               

               
               sag (0.36543)
               

               
               lun (0.300978)
               

               
               lin (0.291206)
               

               
               thg (0.253582)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	469-627, - strand, RNAz p=0.952961
	984-1100, - strand, RNAz p=0.659834

	197-1246, gnl\|bosTau2\|chr13 (9262027-9260988)
	197-1246, gnl\|Hg17\|chr10 (27077682-27076638)

	liv (0.585137)
	fco (0.471624)
	fat (0.442282)
	sag (0.36543)
	lun (0.300978)
	lin (0.291206)
	thg (0.253582)
	jej (0.197844)
	ldo (0.194005)
	fbs (0.175346)
	rec (0.17307)
	mga (0.160205)
	tbr (0.154178)
	spl (0.143184)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	ret (0.128733)
	bla (0.124347)
	eru (0.120048)
	med (0.116252)
	cbl (0.114797)
	cty (0.10408)