Non-Coding RNA Search

Ss1.1-rfat0124_o2.5

Sequence:


               
               TTAAAACTTAACAAAGAGCCAAGTAATTTTTTTTTTTTTTTAAGTGATGTCCATAGCACA
------------------------------------------------AGCCGCTGCAAT
GACAATGCCCAATTTTTAACCTACTCTGCCCCAAGAGAATTCCCCAAGTAATTTCTTATA
TCCTAATCTGATCCATGAATCTGGCTTCTTGTTCTTGCATTCATTATAAAACAATTTCCA
TAGGGAGTTTTCTGGTGTTCTACTGGTTAGGACTTGAAGCTTTCACTGCTGCAGCTAAGT
TCAATTCCTGGTCTGGGAACTCAGATCTTATATCAAGCCACTGCACGACTCAGCAAAAAA
ACCAAACAGAACAACCCCCCAAAACACACAAAAAATTCCTAAAACGCTTTCCATATCATG
GCCCTACATTTGCATTCTTTTCTCAAGGCCCACCGCTGCTCTGTGAAGTTTGGTACCAGG
GATAACAGTGCAGCAGACAGGATTAGAGATAGTTAAGAGAGCAATTCCTTGGTGGCTCTG
TGATCCCAGAGGGGAAAGGCAGTAACTTGAAGCTGTTATACATACCAGTACCAGCAGGAG
ATGAGTTGTAGCTCTTTTTCATGGTCAATTCTGTCCTCTCCTATATTTCACAGGTTGAAG
CAACAACAGTGTTAAAAAGAGAAACTGAAAAATGGCATGCATAGCAGTGGGCGAAGCTGT
GGTTTTTAGTAGTTGCTGATCATTCTCTGTCATTCAGCTTCCCATTTCCTTAACCTTTGC
TCATCCTTTATTCTCCCAGAATTGCTTGAATCCTCAAATGCCCAACTGTGGCCACTGAAG
CTGACTCTGGAGGTGGCAGCTTGGTTCATCTTGCTTGTTTTCATCTTGGAGATCCTTCTT
ATGTGGATATCCAGCTTTTTCCTCTTCTGGAAGAATGCCTGGAATGTCTTTGACTTTGTT
GTGACCATATTGGTAAGGCTGGATATCCTAAAAAGTAACTTATTAAGGCCGAGAAATGTG
CCTAGGTGAATCAAAGACAAGAAAAGTTAAGATCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAACTTAACAAAGAGCCAAGTAATTTTTTTTTTTTTTTAAGTGATGTCCATAGCACA
------------------------------------------------AGCCGCTGCAAT
GACAATGCCCAATTTTTAACCTACTCTGCCCCAAGAGAATTCCCCAAGTAATTTCTTATA
TCCTAATCTGATCCATGAATCTGGCTTCTTGTTCTTGCATTCATTATAAAACAATTTCCA
TAGGGAGTTTTCTGGTGTTCTACTGGTTAGGACTTGAAGCTTTCACTGCTGCAGCTAAGT
TCAATTCCTGGTCTGGGAACTCAGATCTTATATCAAGCCACTGCACGACTCAGCAAAAAA
ACCAAACAGAACAACCCCCCAAAACACACAAAAAATTCCTAAAACGCTTTCCATATCATG
GCCCTACATTTGCATTCTTTTCTCAAGGCCCACCGCTGCTCTGTGAAGTTTGGTACCAGG
GATAACAGTGCAGCAGACAGGATTAGAGATAGTTAAGAGAGCAATTCCTTGGTGGCTCTG
TGATCCCAGAGGGGAAAGGCAGTAACTTGAAGCTGTTATACATACCAGTACCAGCAGGAG
ATGAGTTGTAGCTCTTTTTCATGGTCAATTCTGTCCTCTCCTATATTTCACAGGTTGAAG
CAACAACAGTGTTAAAAAGAGAAACTGAAAAATGGCATGCATAGCAGTGGGCGAAGCTGT
GGTTTTTAGTAGTTGCTGATCATTCTCTGTCATTCAGCTTCCCATTTCCTTAACCTTTGC
TCATCCTTTATTCTCCCAGAATTGCTTGAATCCTCAAATGCCCAACTGTGGCCACTGAAG
CTGACTCTGGAGGTGGCAGCTTGGTTCATCTTGCTTGTTTTCATCTTGGAGATCCTTCTT
ATGTGGATATCCAGCTTTTTCCTCTTCTGGAAGAATGCCTGGAATGTCTTTGACTTTGTT
GTGACCATATTGGTAAGGCTGGATATCCTAAAAAGTAACTTATTAAGGCCGAGAAATGTG
CCTAGGTGAATCAAAGACAAGAAAAGTTAAGATCAC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               352-998, gnl|bosTau2|chr21 (34468605-34467945)
               

               
               352-998, gnl|Hg17|chr15 (41720415-41719739)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               352-998, gnl|bosTau2|chr21 (34468605-34467945)
               

               
               352-998, gnl|Hg17|chr15 (41720415-41719739)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ute (0.132784)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ute (0.132784)

	352-998, gnl\|bosTau2\|chr21 (34468605-34467945)
	352-998, gnl\|Hg17\|chr15 (41720415-41719739)