Non-Coding RNA Search

Ss1.1-rfat0126_c11.5

Sequence:


               
               GTCCACTCACCGACTGCTCCATCATCAACAGTGGCAAGATAGACGTGAAAACGCCCTTCG
TGGTAGAGGTTGCTGACTGGTGATCCAGCTGGCAGAAAACAAAGAACAACACATTCTGGT
GGGGCGTGTGTGTGTGTGTGTGTGCACGTGCGTGTGCACATACACCTGTCTTTTGATTCC
TCAAAGTTAGTGTTTTCCTTTGTTCTTTAACTTTCTTCTGTTTTCCACCCCAGATCACAG
GAGAGGTAGAAAAATCAACCACTGAACATTTAGTTCCCATGACTTTTGGTAAATCACTTG
TTGAGGAGTTTCCCACTTTAAGATACATATCCTTTTCCTTCAATGGTGCTATTTATAAAC
TAGCAAACTTTGTACTGGCTATTTTCTTTTGAGAAACACCGTTATTACTCTGCTGAATTT
ATCGTGATCCCCAAATTGAGTCATGCTAAAGATTATCTGAAGAAGATGGGGACAAGAAGC
TTATTGTTTTGTATTCAAACACAAATTCATTTCCAGGAAAGGGAGATCTGATTAGTATTA
TCTGATGTATGTCACAGGGACTTTTGCCTGATGAAAGGTGCTTTGGTGTCCTCTATTATT
AAATACTTTTTACATAGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCACTCACCGACTGCTCCATCATCAACAGTGGCAAGATAGACGTGAAAACGCCCTTCG
TGGTAGAGGTTGCTGACTGGTGATCCAGCTGGCAGAAAACAAAGAACAACACATTCTGGT
GGGGCGTGTGTGTGTGTGTGTGTGCACGTGCGTGTGCACATACACCTGTCTTTTGATTCC
TCAAAGTTAGTGTTTTCCTTTGTTCTTTAACTTTCTTCTGTTTTCCACCCCAGATCACAG
GAGAGGTAGAAAAATCAACCACTGAACATTTAGTTCCCATGACTTTTGGTAAATCACTTG
TTGAGGAGTTTCCCACTTTAAGATACATATCCTTTTCCTTCAATGGTGCTATTTATAAAC
TAGCAAACTTTGTACTGGCTATTTTCTTTTGAGAAACACCGTTATTACTCTGCTGAATTT
ATCGTGATCCCCAAATTGAGTCATGCTAAAGATTATCTGAAGAAGATGGGGACAAGAAGC
TTATTGTTTTGTATTCAAACACAAATTCATTTCCAGGAAAGGGAGATCTGATTAGTATTA
TCTGATGTATGTCACAGGGACTTTTGCCTGATGAAAGGTGCTTTGGTGTCCTCTATTATT
AAATACTTTTTACATAGAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-138, gnl|bosTau2|chr7 (24266236-24266369)
               

               
               3-138, gnl|Hg17|chr5 (122387549-122387417)
               

               
               3-138, gnl|Mm7|chr18 (53787786-53787655)
               


               
               174-616, gnl|bosTau2|chr7 (24266373-24266805)
               

               
               174-616, gnl|Hg17|chr5 (122387413-122386983)
               

               
               174-616, gnl|Mm7|chr18 (53787654-53787107)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-138, gnl|bosTau2|chr7 (24266236-24266369)
               

               
               3-138, gnl|Hg17|chr5 (122387549-122387417)
               

               
               3-138, gnl|Mm7|chr18 (53787786-53787655)
               


               
               174-616, gnl|bosTau2|chr7 (24266373-24266805)
               

               
               174-616, gnl|Hg17|chr5 (122387413-122386983)
               

               
               174-616, gnl|Mm7|chr18 (53787654-53787107)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)

	3-138, gnl\|bosTau2\|chr7 (24266236-24266369)
	3-138, gnl\|Hg17\|chr5 (122387549-122387417)
	3-138, gnl\|Mm7\|chr18 (53787786-53787655)

	174-616, gnl\|bosTau2\|chr7 (24266373-24266805)
	174-616, gnl\|Hg17\|chr5 (122387413-122386983)
	174-616, gnl\|Mm7\|chr18 (53787654-53787107)

	rec (0.519211)
	pro (0.512033)
	fbs (0.175346)
	fat (0.147427)
	hlv (0.139256)
	ova (0.129132)