Ss1.1-rfat0126_c16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGAGCGGATCGGGTGCCTCGGGCACGGACCGCTACTGCATGGAACTGCTGCGGAAA CGAGATTATGAAGGCTATTTATGTTCCCTGCTATTCCCTGCAGAATCCAGAAGCTCTGCC TTTGCACTGAGAGCCTTCAATGTGGAACTGGCTCAGGTTAAGGACTCAGTCTCTGAGAAA ACAATTGGACTGATGCGAATGCAGTTTTGGAAAAAAACCGTGGATGATATATACTGTGAC AGTCCACCACATCAGCCTGTGGCCATTGAACTATGGAAGGCTGTCAAAAGACATAATCTG ACTAAAAGATGGCTTATGAAAATCATTGATGAAAGAGAAAAAAATTTGGATGACAAAGCA TATCTTAATATCCAGGAACTGGAAAATTATGCTGAAAACACACAGAGCTCTCTTCTTTAT TTAACACTAGAAATATTGGGTGTAAAGGATCTTCATGCAGATCATGCTGCGAGTCATATT GGAAAAGCACAAGGCATTGTCACTTGCTTGAGAGCAACGCCCTATCATGGTAGCCGAAGA AGGGTCTTCCTTCCCATGGATATTTGTATGCTGCATGGTGTTTCCCAAGAGGATTTTTTG CGGAAAAGCCAAGATAAAAATGTGAGAGATGTGGTGTATGACATTGCCAGCCAGGCACAC CTGCACCTAAAGCATGCAAGGTCCTTCCACAAAAGCGTTCCTGCGAAAGCATTTCCTGCT TTTCTTCAGACAGTTGCTCTGGAGGACTATTTAAAGAAAATTCAACAAGTGGATTTTGAT ATATTCCACCCATCTTTACAGCAGAAGAATACGTTACTTCCGTTATCTGTGTATATTCAG TCATGGAGAAAAAGATATTAAAATAATTTGCGCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGAGCGGATCGGGTGCCTCGGGCACGGACCGCTACTGCATGGAACTGCTGCGGAAA CGAGATTATGAAGGCTATTTATGTTCCCTGCTATTCCCTGCAGAATCCAGAAGCTCTGCC TTTGCACTGAGAGCCTTCAATGTGGAACTGGCTCAGGTTAAGGACTCAGTCTCTGAGAAA ACAATTGGACTGATGCGAATGCAGTTTTGGAAAAAAACCGTGGATGATATATACTGTGAC AGTCCACCACATCAGCCTGTGGCCATTGAACTATGGAAGGCTGTCAAAAGACATAATCTG ACTAAAAGATGGCTTATGAAAATCATTGATGAAAGAGAAAAAAATTTGGATGACAAAGCA TATCTTAATATCCAGGAACTGGAAAATTATGCTGAAAACACACAGAGCTCTCTTCTTTAT TTAACACTAGAAATATTGGGTGTAAAGGATCTTCATGCAGATCATGCTGCGAGTCATATT GGAAAAGCACAAGGCATTGTCACTTGCTTGAGAGCAACGCCCTATCATGGTAGCCGAAGA AGGGTCTTCCTTCCCATGGATATTTGTATGCTGCATGGTGTTTCCCAAGAGGATTTTTTG CGGAAAAGCCAAGATAAAAATGTGAGAGATGTGGTGTATGACATTGCCAGCCAGGCACAC CTGCACCTAAAGCATGCAAGGTCCTTCCACAAAAGCGTTCCTGCGAAAGCATTTCCTGCT TTTCTTCAGACAGTTGCTCTGGAGGACTATTTAAAGAAAATTCAACAAGTGGATTTTGAT ATATTCCACCCATCTTTACAGCAGAAGAATACGTTACTTCCGTTATCTGTGTATATTCAG TCATGGAGAAAAAGATATTAAAATAATTTGCGCCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 56-157, gnl|bosTau2|chr14 (43029870-43029971) | |
| 56-157, gnl|canFam2|chr29 (42656534-42656650) | |
| 56-157, gnl|danRer3|chr16 (39799091-39799207) | |
| 56-157, gnl|dasNov1|scaffold_12221 (2019-1903) | |
| 56-157, gnl|echTel1|scaffold_140106 (408-296) | |
| 56-157, gnl|fr1|chrUn (138080824-138080709) | |
| 56-157, gnl|hg17|chr8 (96113392-96113508) | |
| 56-157, gnl|Hg17|chr8 (96113398-96113499) | |
| 56-157, gnl|loxAfr1|scaffold_27115 (2531-2422) | |
| 56-157, gnl|mm7|chr4 (11000399-11000283) | |
| 56-157, gnl|Mm7|chr4 (11000391-11000290) | |
| 56-157, gnl|monDom2|scaffold_3 (70554528-70554412) | |
| 56-157, gnl|oryCun1|scaffold_199181 (188510-188592) | |
| 56-157, gnl|panTro1|chr7 (98346145-98346261) | |
| 56-157, gnl|rheMac2|chr8 (97607504-97607620) | |
| 56-157, gnl|rn3|chr5 (24915228-24915112) | |
| 56-157, gnl|tetNig1|chrUn_random (41223300-41223416) | |
| 280-526, gnl|bosTau2|chr10 (10774481-10774237) | |
| 280-526, gnl|Mm7|chr6 (27706942-27707166) | |
| 560-680, gnl|bosTau2|chr14 (43048622-43048742) | |
| 560-680, gnl|Hg17|chr8 (96129847-96129967) | |
| 560-680, gnl|Mm7|chr4 (10986272-10986154) | |
| 733-867, gnl|bosTau2|chr14 (43057014-43057148) | |
| 733-867, gnl|canFam2|chr29 (42676008-42676160) | |
| 733-867, gnl|danRer3|chr16 (39817852-39817985) | |
| 733-867, gnl|dasNov1|scaffold_10784 (786-938) | |
| 733-867, gnl|echTel1|scaffold_39932 (2292-2444) | |
| 733-867, gnl|fr1|chrUn (138078528-138078395) | |
| 733-867, gnl|hg17|chr8 (96139209-96139361) | |
| 733-867, gnl|Hg17|chr8 (96139213-96139347) | |
| 733-867, gnl|mm7|chr4 (10978378-10978220) | |
| 733-867, gnl|Mm7|chr4 (10978372-10978238) | |
| 733-867, gnl|monDom2|scaffold_3 (70527387-70527235) | |
| 733-867, gnl|oryCun1|scaffold_213036 (45772-45931) | |
| 733-867, gnl|panTro1|chr7 (98372430-98372582) | |
| 733-867, gnl|rheMac2|chr8 (97636240-97636392) | |
| 733-867, gnl|rn3|chr5 (24893707-24893556) | |
| 733-867, gnl|tetNig1|chrUn_random (41224784-41224917) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 56-157, gnl|bosTau2|chr14 (43029870-43029971) | |
| 56-157, gnl|canFam2|chr29 (42656534-42656650) | |
| 56-157, gnl|danRer3|chr16 (39799091-39799207) | |
| 56-157, gnl|dasNov1|scaffold_12221 (2019-1903) | |
| 56-157, gnl|echTel1|scaffold_140106 (408-296) | |
| 56-157, gnl|fr1|chrUn (138080824-138080709) | |
| 56-157, gnl|hg17|chr8 (96113392-96113508) | |
| 56-157, gnl|Hg17|chr8 (96113398-96113499) | |
| 56-157, gnl|loxAfr1|scaffold_27115 (2531-2422) | |
| 56-157, gnl|mm7|chr4 (11000399-11000283) | |
| 56-157, gnl|Mm7|chr4 (11000391-11000290) | |
| 56-157, gnl|monDom2|scaffold_3 (70554528-70554412) | |
| 56-157, gnl|oryCun1|scaffold_199181 (188510-188592) | |
| 56-157, gnl|panTro1|chr7 (98346145-98346261) | |
| 56-157, gnl|rheMac2|chr8 (97607504-97607620) | |
| 56-157, gnl|rn3|chr5 (24915228-24915112) | |
| 56-157, gnl|tetNig1|chrUn_random (41223300-41223416) | |
| 280-526, gnl|bosTau2|chr10 (10774481-10774237) | |
| 280-526, gnl|Mm7|chr6 (27706942-27707166) | |
| 560-680, gnl|bosTau2|chr14 (43048622-43048742) | |
| 560-680, gnl|Hg17|chr8 (96129847-96129967) | |
| 560-680, gnl|Mm7|chr4 (10986272-10986154) | |
| 733-867, gnl|bosTau2|chr14 (43057014-43057148) | |
| 733-867, gnl|canFam2|chr29 (42676008-42676160) | |
| 733-867, gnl|danRer3|chr16 (39817852-39817985) | |
| 733-867, gnl|dasNov1|scaffold_10784 (786-938) | |
| 733-867, gnl|echTel1|scaffold_39932 (2292-2444) | |
| 733-867, gnl|fr1|chrUn (138078528-138078395) | |
| 733-867, gnl|hg17|chr8 (96139209-96139361) | |
| 733-867, gnl|Hg17|chr8 (96139213-96139347) | |
| 733-867, gnl|mm7|chr4 (10978378-10978220) | |
| 733-867, gnl|Mm7|chr4 (10978372-10978238) | |
| 733-867, gnl|monDom2|scaffold_3 (70527387-70527235) | |
| 733-867, gnl|oryCun1|scaffold_213036 (45772-45931) | |
| 733-867, gnl|panTro1|chr7 (98372430-98372582) | |
| 733-867, gnl|rheMac2|chr8 (97636240-97636392) | |
| 733-867, gnl|rn3|chr5 (24893707-24893556) | |
| 733-867, gnl|tetNig1|chrUn_random (41224784-41224917) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sme (0.305437) | |
| tes (0.207814) | |
| fat (0.147427) | |
| che (0.136314) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| tes (0.207814) | |
| fat (0.147427) | |
| che (0.136314) | |
| ldo (0.0970026) |