Non-Coding RNA Search

Ss1.1-rfat0126_c20.5

Sequence:


               
               CGAGATGTGACAACGTTTTAGAAAAGGTCTGCTGGGAGTTCCCATTGTGGCTCAGCGGTA
ACAAACCCAACTAATATCCATGAGGATGCGGGTTCGATCCCTGGCCTTGCTCAGTGGGTT
AAGGATCCGGCGTTCCCATGAGCTGTGGTATAGGTTGAAGATACCGCTCCAATCCCACGT
TACTGTGGCTGTGGTGTAGGCTGGCAGCTGTAGCTCCTATTAGACCCCTAGCCTGAAACC
CTCCATATGCCGCACCACGCCTCCCCCGCCACCCCCGCAAAAAAAAAGAAGGAAGGAAAG
AAAGAAAAGACAAGGCCTGCTGTATTTCATGACTTGGTTTTGCAAGTAAGGGGTGTGAGG
AAAACTCTGCAGCTGTGAGCCTCCCACCAGCCAGAGCTCAGCCTGTTGATCTCACTTTTG
CTCTTGAGAGAAAGGAGCTAGAAACCCAAGTTAGTATCTCTGGTGCTTAGAAACCCTGTG
GATTTCCCTCTGAACCAAGTTTTTTAAATAGTAAAATAGACGACTATATGACCATCTGTC
AGATTCAAAGTTTTGGACCTGTTAGGAGAGAGACTACAAAGAAAATTCTAGACCCTTTTA
TGGGAAAGTTTGACACGTGGCTTTTCCCTCCTTGAGTCATAGGATGCATCCGTCTCCCAG
GAAATATTCCCTGGCACCTGCTTGCCCTTCTGAGTCTGCCCTTTTTGCACTGAACATAAG
CACTTTATACGAATGGGTTGCAAAGTGTACAGCCCTTAATTTGGGATGTTAAGATCAGAT
TTTCCTGACTTTTTCCTCAAACTGACAACCATAGACTGACATAAGGTGAGGCTTCAGGGC
TTTGAACATCAGGCTGTGGTCTCCAGCAAAAAACAAAAAGAAACCAAACTAATGTACATG
ATGAAGGGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGATGTGACAACGTTTTAGAAAAGGTCTGCTGGGAGTTCCCATTGTGGCTCAGCGGTA
ACAAACCCAACTAATATCCATGAGGATGCGGGTTCGATCCCTGGCCTTGCTCAGTGGGTT
AAGGATCCGGCGTTCCCATGAGCTGTGGTATAGGTTGAAGATACCGCTCCAATCCCACGT
TACTGTGGCTGTGGTGTAGGCTGGCAGCTGTAGCTCCTATTAGACCCCTAGCCTGAAACC
CTCCATATGCCGCACCACGCCTCCCCCGCCACCCCCGCAAAAAAAAAGAAGGAAGGAAAG
AAAGAAAAGACAAGGCCTGCTGTATTTCATGACTTGGTTTTGCAAGTAAGGGGTGTGAGG
AAAACTCTGCAGCTGTGAGCCTCCCACCAGCCAGAGCTCAGCCTGTTGATCTCACTTTTG
CTCTTGAGAGAAAGGAGCTAGAAACCCAAGTTAGTATCTCTGGTGCTTAGAAACCCTGTG
GATTTCCCTCTGAACCAAGTTTTTTAAATAGTAAAATAGACGACTATATGACCATCTGTC
AGATTCAAAGTTTTGGACCTGTTAGGAGAGAGACTACAAAGAAAATTCTAGACCCTTTTA
TGGGAAAGTTTGACACGTGGCTTTTCCCTCCTTGAGTCATAGGATGCATCCGTCTCCCAG
GAAATATTCCCTGGCACCTGCTTGCCCTTCTGAGTCTGCCCTTTTTGCACTGAACATAAG
CACTTTATACGAATGGGTTGCAAAGTGTACAGCCCTTAATTTGGGATGTTAAGATCAGAT
TTTCCTGACTTTTTCCTCAAACTGACAACCATAGACTGACATAAGGTGAGGCTTCAGGGC
TTTGAACATCAGGCTGTGGTCTCCAGCAAAAAACAAAAAGAAACCAAACTAATGTACATG
ATGAAGGGTTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               309-801, gnl|bosTau2|chr10 (53710874-53710379)
               

               
               309-801, gnl|Hg17|chr14 (67283658-67283169)
               

               
               309-801, gnl|Mm7|chr12 (77191455-77190997)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               309-801, gnl|bosTau2|chr10 (53710874-53710379)
               

               
               309-801, gnl|Hg17|chr14 (67283658-67283169)
               

               
               309-801, gnl|Mm7|chr12 (77191455-77190997)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               fce (0.271592)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cly (0.120642)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cly (0.120642)

	309-801, gnl\|bosTau2\|chr10 (53710874-53710379)
	309-801, gnl\|Hg17\|chr14 (67283658-67283169)
	309-801, gnl\|Mm7\|chr12 (77191455-77190997)

	fce (0.271592)
	nms (0.213858)
	col (0.195008)
	rec (0.17307)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	cly (0.120642)