Non-Coding RNA Search

Ss1.1-rfat0126_g2.5

Sequence:


               
               CAGGAAGGCGTCGCTGAGCGGCCCTGGGAGCAGCGGAGAGCCCGGCGCCCGGGCCCGGCG
CCGCAGCTCTGCCAGGCTGGGCTGCAGCAGCGGCGAGTGGTCGGGCAGCAGGCTGAGCTG
CGCCCCCGCCGGCCCCGGCGCCTCCGCCATACCCGCCGCCCTACCCACACCGCTGCCTCC
GCGCCGGGAAAAGCGCGGCCGGCCGGCCACCCCTCCTTCGCCGGCCGCTCGCCCTGCCCG
CCGGGCTGTGCCGGGACCTCCGCAGAGGGAGACACGTGGTGGCCCCACCGCGCTCCGCGT
CCCGCAGGCTCCAGCATGGAACCAGGCAGATGTTATGAGGCTCAAAGGAGGAATCAAGAC
AGCACCCATTGACAGGGAGTCAAGGCTGTTGAAAAAGGAATGTGCACAGGGAGACACAAC
TAACCTCTTCTACTGGGAGGGAAAGAGGCCAACTGACACTCTACCAGAGCCGCAGCTGAG
AATTCGTTTCAACTGAGCCACGACGGGAACTCTGACATCTATGATTGATTCAAGCTCCAG
CCTCTCTCCCTGGAAATCAGGAGGTGGGAGTGAAAGTATGGTCTATTCAGGCTTGGATCT
CCTGGCAACCAGCAGGCCCATTTCTGAGTCATTTCCCAAAGTCACCTCATTGTCATAAAC
TCAGTTGGGGTTGAAAGAGCCTTGGGAGGAGTAACAAGACATCCATCTCTAAGAGACTGA
AAATTCACTGGACTCCTACTACAGAGTTAAGACTTGTCATAAAATTATTGATACGCAATA
AGTCATGAATTTGGTAAAATCAAGTTACTTCATCATTGCTCTTGTTCCTTAATTTCCTCT
ATAAATTCCAAATAGAGTTGGAGAAATTCTGCTATTTCTGCTGATGATCGACTGCATTAC
TGGGGCATCCTCTAGGATTTTCAAAACAAGTCCCTTTTCTTAAATATTAGAGTGTACATG
ACAGACTTTATCTTCCATACTCACGTACCTAAAATTGTGCACTTTTGATGCTTTTCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAAGGCGTCGCTGAGCGGCCCTGGGAGCAGCGGAGAGCCCGGCGCCCGGGCCCGGCG
CCGCAGCTCTGCCAGGCTGGGCTGCAGCAGCGGCGAGTGGTCGGGCAGCAGGCTGAGCTG
CGCCCCCGCCGGCCCCGGCGCCTCCGCCATACCCGCCGCCCTACCCACACCGCTGCCTCC
GCGCCGGGAAAAGCGCGGCCGGCCGGCCACCCCTCCTTCGCCGGCCGCTCGCCCTGCCCG
CCGGGCTGTGCCGGGACCTCCGCAGAGGGAGACACGTGGTGGCCCCACCGCGCTCCGCGT
CCCGCAGGCTCCAGCATGGAACCAGGCAGATGTTATGAGGCTCAAAGGAGGAATCAAGAC
AGCACCCATTGACAGGGAGTCAAGGCTGTTGAAAAAGGAATGTGCACAGGGAGACACAAC
TAACCTCTTCTACTGGGAGGGAAAGAGGCCAACTGACACTCTACCAGAGCCGCAGCTGAG
AATTCGTTTCAACTGAGCCACGACGGGAACTCTGACATCTATGATTGATTCAAGCTCCAG
CCTCTCTCCCTGGAAATCAGGAGGTGGGAGTGAAAGTATGGTCTATTCAGGCTTGGATCT
CCTGGCAACCAGCAGGCCCATTTCTGAGTCATTTCCCAAAGTCACCTCATTGTCATAAAC
TCAGTTGGGGTTGAAAGAGCCTTGGGAGGAGTAACAAGACATCCATCTCTAAGAGACTGA
AAATTCACTGGACTCCTACTACAGAGTTAAGACTTGTCATAAAATTATTGATACGCAATA
AGTCATGAATTTGGTAAAATCAAGTTACTTCATCATTGCTCTTGTTCCTTAATTTCCTCT
ATAAATTCCAAATAGAGTTGGAGAAATTCTGCTATTTCTGCTGATGATCGACTGCATTAC
TGGGGCATCCTCTAGGATTTTCAAAACAAGTCCCTTTTCTTAAATATTAGAGTGTACATG
ACAGACTTTATCTTCCATACTCACGTACCTAAAATTGTGCACTTTTGATGCTTTTCAGTA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-314, gnl|bosTau2|chr14 (17480515-17480198)
               

               
               1-314, gnl|Hg17|chr8 (64160979-64161362)
               


               
               522-709, gnl|bosTau2|chr19 (36161252-36161443)
               


               
               713-884, gnl|bosTau2|chr14 (17457505-17457345)
               

               
               713-884, gnl|Hg17|chr8 (64189687-64189846)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-314, gnl|bosTau2|chr14 (17480515-17480198)
               

               
               1-314, gnl|Hg17|chr8 (64160979-64161362)
               


               
               522-709, gnl|bosTau2|chr19 (36161252-36161443)
               


               
               713-884, gnl|bosTau2|chr14 (17457505-17457345)
               

               
               713-884, gnl|Hg17|chr8 (64189687-64189846)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.147427)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)

	1-314, gnl\|bosTau2\|chr14 (17480515-17480198)
	1-314, gnl\|Hg17\|chr8 (64160979-64161362)

	522-709, gnl\|bosTau2\|chr19 (36161252-36161443)

	713-884, gnl\|bosTau2\|chr14 (17457505-17457345)
	713-884, gnl\|Hg17\|chr8 (64189687-64189846)