Non-Coding RNA Search

Ss1.1-rfat0126_k5.5

Sequence:


               
               AAAAAAAAAAGCTCTCTGTGGGATTCTGGTAGTTCTTCACTGTCTGCCTCTGGGCTAGTC
AGTGTCAGAGACAAGCTCCGAGCTGCCACTGGGTTCTATACTTGTCACATTCCAGATCTG
TGGTGGGCTCTGGGGTGTCTGTGTGTGGTTACAGCCCTGCAGAGTGGGTGTGTCTTGTAA
GCTTTACGCAGGCCATCAGGACGCGTGTAGAATGTCACTCCTTTAGCTAATTACATGTGA
TTTCTCTTTCTTTTGACCTTTGCAGATATTTAAATTATCACTGTTTTTATGTCTAGGAAA
ACATGATTGGTGGTCTGACCAATCCACATTTCATCCTCCTATCCTCCTAGCAGAACTTAC
TTGAAGTGAATGTCATTATACTCTGACTTTTTAAATTATGCAGTGTTCTCCAGTTTTCAA
AGAGGCTGTAGTTAAGGCCAGGGAAATGTGTTGGTTTAACTAGAGCTAAAATGATCAGGA
TCCTATTTACAGAAAGCTTATTAGAATACCTGCTCCTTCTTTTTTTTGAAGGAAATGCAT
ATTAGGGTTGAAAACAGCTGTAATTTACTTGAACTTGTAACAGAACTACCAAAAATTAAA
GTGCTAATGGCAGTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAGCTCTCTGTGGGATTCTGGTAGTTCTTCACTGTCTGCCTCTGGGCTAGTC
AGTGTCAGAGACAAGCTCCGAGCTGCCACTGGGTTCTATACTTGTCACATTCCAGATCTG
TGGTGGGCTCTGGGGTGTCTGTGTGTGGTTACAGCCCTGCAGAGTGGGTGTGTCTTGTAA
GCTTTACGCAGGCCATCAGGACGCGTGTAGAATGTCACTCCTTTAGCTAATTACATGTGA
TTTCTCTTTCTTTTGACCTTTGCAGATATTTAAATTATCACTGTTTTTATGTCTAGGAAA
ACATGATTGGTGGTCTGACCAATCCACATTTCATCCTCCTATCCTCCTAGCAGAACTTAC
TTGAAGTGAATGTCATTATACTCTGACTTTTTAAATTATGCAGTGTTCTCCAGTTTTCAA
AGAGGCTGTAGTTAAGGCCAGGGAAATGTGTTGGTTTAACTAGAGCTAAAATGATCAGGA
TCCTATTTACAGAAAGCTTATTAGAATACCTGCTCCTTCTTTTTTTTGAAGGAAATGCAT
ATTAGGGTTGAAAACAGCTGTAATTTACTTGAACTTGTAACAGAACTACCAAAAATTAAA
GTGCTAATGGCAGTGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               461-579, - strand, RNAz p=0.762165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               461-579, - strand, RNAz p=0.762165

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               37-607, gnl|bosTau2|chr11 (29784276-29784854)
               

               
               37-607, gnl|Hg17|chr11 (76409578-76410112)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-607, gnl|bosTau2|chr11 (29784276-29784854)
               

               
               37-607, gnl|Hg17|chr11 (76409578-76410112)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fat (0.147427)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               thg (0.126791)

	37-607, gnl\|bosTau2\|chr11 (29784276-29784854)
	37-607, gnl\|Hg17\|chr11 (76409578-76410112)