Non-Coding RNA Search

Ss1.1-rfat0128_g18.5.5

Sequence:


               
               GGGTGGACGGGAGCAGCCAGCCAGGCTTGGCTTGTAGGCCCGGCGCCGGGGGAGGAGCGA
GGCGGGCTGCAGGTCACGACGGCCGCGGCCACGCAGACCCGGGCTTCGGAGGAGACAAGG
CTGCGCGCGGGACGGAAGACCCAGGCCCTCCAACCTTCGCCACCTGCCCAGGCCTAGAGA
GTGAGGAGGAGAACCAACTTCTTTTGCAAGACTGGACGACGGGCGAACCGGCGTTGTTCA
GTCAGAGCGAGAACATTCCAGAGGTCGCCAGGCCCCGGGCGCTGAAGGGTGTGGACCCCG
GACGTCGCTGGGACAGCCCCTCCCCGCTGCTCGGCGGCGCCTGGCCCGGCCGCTGCTCGC
TGCGCTGCCTCCGCCGCCTCCGCCGCCCCTCCTCGGACTCGGGTTCACACGCGCCTCACT
TCATCCCAGTCCCGGGCGAGCAGCGTTGGGTTTATGTCTTTATTTGACGAAAACGAGCTG
TTGCGCAGCCATTGGTACCTGTATTGGGGAAACATAGCATACAAGCAAGAAGCTTACAGC
CTCAGTGGCGAAAAATTTTTCATGTCAGAGACCGAGAACTCTTGCAGTCGTTTATGTCAT
CCCTTCTTCTCCAGACAGAGGATACCAAAAAGTTGCAATCAAAGATCTCTTCATCTTATT
GATAAAGTCACTAATAAGCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGT
TCTATCGTTACAAGATGCCCCGTCTGATTGCCAAGGTCGAGGGCAAAGGAAATGGAATCA
AGACAGTTATAGTCAACATGGTTGACGTAGCCAAAGCGCTTAATCGGCCTCCTACGTATC
CCACCAAATATTTTGGTTGTGAGCTGGGAGCACAGACCCAGTTTGATGTTAAGAATGACC
GTTACATTGTCAACGGATCTCATGAGGCGAATAAGCTGCAAGACATGTTGGATGGATTCA
TTAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCTGAAACAGATCTGCATGTCAATC
CAAAGAAGCAAACAATAGGTAATTCTTGTAAAGCCTGTGGCTATCGAGGCATGCTTGACA
CACATCATAAACTCTGCACATTCATTCTCAAAAACCCACCTGAGAATAGTGACAGTGGTA
CAGGAAAGAAAGAAAAGGAAAAGAAAAACAGAAAGGGCAAGGACAAGGAAAATGGCACCG
TGTCCAGCAGTGAGACACCACCACCACCACCACCACCAAATGAAATCAATCCCCCTCCAC
ATGCTGTGGAAGAAGAGGAGGACGATGACTGGGGGGAGGATACAACAGAGGAAGCTCAAA
GGCGCAGAATGGATGAAATCAGTGACCATGCAAAAGTTTTAACCCTCAGTGATGATTTGG
AAAGAACTGTTGAAGAGCGTGTCAATATCTTGTTTGATTTTGTTAAGAAAAAGAAAGAAG
AGGGTATTATTGACTCTTCTGACAAAGAAATTGTAGCTGAAGCAGAAAGATTGGATGTAA
AGGCCATGGGCCCTCTTGTTTTGACTGAAGTTCTTTTTAATGAGAAGATTAGAGAACAAA
TTAAGAAATACAGGCGCCATTTCTTACGATTTTGCCACAACAACAAAAAAGCTCAACGGT
ACCTTCTTCATGGTTTGGAGTGTGTGGTAGCAATGCATCAAGCTCAGCTCATCTCCAAAA
TTCCGCATATCTTGAAGGAGATGTATGACGCAGACCTTTTGGAGGAAGAAGTCATCATTA
GCTGGTCGGAAAAGGCTTCTAAGAAATATGTCTCAAAAGAACTTGCCAAAGAGATTCGTG
TCAAAGCGGAACCATTTATAAAATGGTTGAAGGAAGCAGAGGAAGAATCTTCTGGTGGTG
AAGATGATGATGAAGATGAGAATATCGAGGTGGTGTATTCGAAGACTGCCAGCGTACCGA
AAGTTGAAGCTGTGAAGTCTGACAACAAGGATGATGACATTGATATTGATGCCATTTAAA
GGGGTGGGTGTAGCCCAGCTTAACTGTGTAATGCTGAGAATCTTTTTGCATCATCAGGCA
GAAGTGCAACATGTATGTGCAAAAGCTAAAATGGCTTAACATCATGCTACACTTTCTACT
AAAAATGTATTGCTGTGAGTGGTCTGTAATTAAACCCAACAAGACATCTAGGGAGTCCAT
ACACATCAGTGAGCAGGTGTAGTTTGCTTATTTATAGCATGTTTCTTTTTGAAAAATTAG
TGGTGGACACATTTGGATCACATTTATACAGTTATAAAAATAAAGATTTGATTTTGGTCA
TTCTTCAGATTTGGGGCTCGAATGACTTAAGTTGAAATGGCTCCTCTTAAAAATGTTGCA
CCATCATTTAACTTGGTAAGATTATTGGAGCCTGTTAGTATTGTTGGGTGCTGAGACTAT
AGAGAGATCTTCAGCAGAATGTGAACGTAAACTTATAATTATCTTACTCAGCCATTAAGA
AATAGTACTTTGAAGTCTTATCTTTAGTCCTTCATGTTGGCGTGTGGTAATGTCCATTCC
TCCCGTGCCAAGCTGGACTGGTTACCAGATGACAATGAAACACTTTACGAAGAAGTCGAA
ATGACCTGAGTGTCCTATAAATAATTTTAAGAGCAGGTTTTGAAACTTGAATTATTTTTT
GGGTTTTTTTTGTTGTTGTTGTTGTTTTTTTTAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGGACGGGAGCAGCCAGCCAGGCTTGGCTTGTAGGCCCGGCGCCGGGGGAGGAGCGA
GGCGGGCTGCAGGTCACGACGGCCGCGGCCACGCAGACCCGGGCTTCGGAGGAGACAAGG
CTGCGCGCGGGACGGAAGACCCAGGCCCTCCAACCTTCGCCACCTGCCCAGGCCTAGAGA
GTGAGGAGGAGAACCAACTTCTTTTGCAAGACTGGACGACGGGCGAACCGGCGTTGTTCA
GTCAGAGCGAGAACATTCCAGAGGTCGCCAGGCCCCGGGCGCTGAAGGGTGTGGACCCCG
GACGTCGCTGGGACAGCCCCTCCCCGCTGCTCGGCGGCGCCTGGCCCGGCCGCTGCTCGC
TGCGCTGCCTCCGCCGCCTCCGCCGCCCCTCCTCGGACTCGGGTTCACACGCGCCTCACT
TCATCCCAGTCCCGGGCGAGCAGCGTTGGGTTTATGTCTTTATTTGACGAAAACGAGCTG
TTGCGCAGCCATTGGTACCTGTATTGGGGAAACATAGCATACAAGCAAGAAGCTTACAGC
CTCAGTGGCGAAAAATTTTTCATGTCAGAGACCGAGAACTCTTGCAGTCGTTTATGTCAT
CCCTTCTTCTCCAGACAGAGGATACCAAAAAGTTGCAATCAAAGATCTCTTCATCTTATT
GATAAAGTCACTAATAAGCCAAAATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGT
TCTATCGTTACAAGATGCCCCGTCTGATTGCCAAGGTCGAGGGCAAAGGAAATGGAATCA
AGACAGTTATAGTCAACATGGTTGACGTAGCCAAAGCGCTTAATCGGCCTCCTACGTATC
CCACCAAATATTTTGGTTGTGAGCTGGGAGCACAGACCCAGTTTGATGTTAAGAATGACC
GTTACATTGTCAACGGATCTCATGAGGCGAATAAGCTGCAAGACATGTTGGATGGATTCA
TTAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCTGAAACAGATCTGCATGTCAATC
CAAAGAAGCAAACAATAGGTAATTCTTGTAAAGCCTGTGGCTATCGAGGCATGCTTGACA
CACATCATAAACTCTGCACATTCATTCTCAAAAACCCACCTGAGAATAGTGACAGTGGTA
CAGGAAAGAAAGAAAAGGAAAAGAAAAACAGAAAGGGCAAGGACAAGGAAAATGGCACCG
TGTCCAGCAGTGAGACACCACCACCACCACCACCACCAAATGAAATCAATCCCCCTCCAC
ATGCTGTGGAAGAAGAGGAGGACGATGACTGGGGGGAGGATACAACAGAGGAAGCTCAAA
GGCGCAGAATGGATGAAATCAGTGACCATGCAAAAGTTTTAACCCTCAGTGATGATTTGG
AAAGAACTGTTGAAGAGCGTGTCAATATCTTGTTTGATTTTGTTAAGAAAAAGAAAGAAG
AGGGTATTATTGACTCTTCTGACAAAGAAATTGTAGCTGAAGCAGAAAGATTGGATGTAA
AGGCCATGGGCCCTCTTGTTTTGACTGAAGTTCTTTTTAATGAGAAGATTAGAGAACAAA
TTAAGAAATACAGGCGCCATTTCTTACGATTTTGCCACAACAACAAAAAAGCTCAACGGT
ACCTTCTTCATGGTTTGGAGTGTGTGGTAGCAATGCATCAAGCTCAGCTCATCTCCAAAA
TTCCGCATATCTTGAAGGAGATGTATGACGCAGACCTTTTGGAGGAAGAAGTCATCATTA
GCTGGTCGGAAAAGGCTTCTAAGAAATATGTCTCAAAAGAACTTGCCAAAGAGATTCGTG
TCAAAGCGGAACCATTTATAAAATGGTTGAAGGAAGCAGAGGAAGAATCTTCTGGTGGTG
AAGATGATGATGAAGATGAGAATATCGAGGTGGTGTATTCGAAGACTGCCAGCGTACCGA
AAGTTGAAGCTGTGAAGTCTGACAACAAGGATGATGACATTGATATTGATGCCATTTAAA
GGGGTGGGTGTAGCCCAGCTTAACTGTGTAATGCTGAGAATCTTTTTGCATCATCAGGCA
GAAGTGCAACATGTATGTGCAAAAGCTAAAATGGCTTAACATCATGCTACACTTTCTACT
AAAAATGTATTGCTGTGAGTGGTCTGTAATTAAACCCAACAAGACATCTAGGGAGTCCAT
ACACATCAGTGAGCAGGTGTAGTTTGCTTATTTATAGCATGTTTCTTTTTGAAAAATTAG
TGGTGGACACATTTGGATCACATTTATACAGTTATAAAAATAAAGATTTGATTTTGGTCA
TTCTTCAGATTTGGGGCTCGAATGACTTAAGTTGAAATGGCTCCTCTTAAAAATGTTGCA
CCATCATTTAACTTGGTAAGATTATTGGAGCCTGTTAGTATTGTTGGGTGCTGAGACTAT
AGAGAGATCTTCAGCAGAATGTGAACGTAAACTTATAATTATCTTACTCAGCCATTAAGA
AATAGTACTTTGAAGTCTTATCTTTAGTCCTTCATGTTGGCGTGTGGTAATGTCCATTCC
TCCCGTGCCAAGCTGGACTGGTTACCAGATGACAATGAAACACTTTACGAAGAAGTCGAA
ATGACCTGAGTGTCCTATAAATAATTTTAAGAGCAGGTTTTGAAACTTGAATTATTTTTT
GGGTTTTTTTTGTTGTTGTTGTTGTTTTTTTTAGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56207821|emb|CAI21348.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56207821|emb|CAI21348.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2055-2285, gnl|bosTau2|chr10 (18047048-18046822)
               

               
               2055-2285, gnl|Hg17|chr14 (102877218-102877448)
               

               
               2055-2285, gnl|Mm7|chr12 (109060868-109061100)
               


               
               2464-2651, gnl|bosTau2|chr13 (54342190-54342387)
               

               
               2464-2651, gnl|Hg17|chr14 (102877637-102877805)
               

               
               2464-2651, gnl|Mm7|chr12 (109061260-109061445)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2055-2285, gnl|bosTau2|chr10 (18047048-18046822)
               

               
               2055-2285, gnl|Hg17|chr14 (102877218-102877448)
               

               
               2055-2285, gnl|Mm7|chr12 (109060868-109061100)
               


               
               2464-2651, gnl|bosTau2|chr13 (54342190-54342387)
               

               
               2464-2651, gnl|Hg17|chr14 (102877637-102877805)
               

               
               2464-2651, gnl|Mm7|chr12 (109061260-109061445)

Expressed library(ies): 51 entry(ies)

More info

Expressed library(ies): 51 entry(ies)

Help | Less info


               
               hea (0.817996)
               

               
               fce (0.814775)
               

               
               tbr (0.770891)
               

               
               isp (0.75188)
               

               
               cte (0.58548)
               

               
               gul (0.532765)
               

               
               eje (0.494169)
               

               
               ldo (0.485013)
               

               
               jca (0.45584)
               

               
               spc (0.453463)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               hlv (0.417769)
               

               
               tes (0.415628)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.817996)
               

               
               fce (0.814775)
               

               
               tbr (0.770891)
               

               
               isp (0.75188)
               

               
               cte (0.58548)
               

               
               gul (0.532765)
               

               
               eje (0.494169)
               

               
               ldo (0.485013)
               

               
               jca (0.45584)
               

               
               spc (0.453463)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               hlv (0.417769)
               

               
               tes (0.415628)
               

               
               pla (0.401016)
               

               
               lyg (0.399308)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               ecc (0.345105)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	2055-2285, gnl\|bosTau2\|chr10 (18047048-18046822)
	2055-2285, gnl\|Hg17\|chr14 (102877218-102877448)
	2055-2285, gnl\|Mm7\|chr12 (109060868-109061100)

	2464-2651, gnl\|bosTau2\|chr13 (54342190-54342387)
	2464-2651, gnl\|Hg17\|chr14 (102877637-102877805)
	2464-2651, gnl\|Mm7\|chr12 (109061260-109061445)

	hea (0.817996)
	fce (0.814775)
	tbr (0.770891)
	isp (0.75188)
	cte (0.58548)
	gul (0.532765)
	eje (0.494169)
	ldo (0.485013)
	jca (0.45584)
	spc (0.453463)
	lin (0.436808)
	spl (0.429553)
	hlv (0.417769)
	tes (0.415628)
	pla (0.401016)
	lyg (0.399308)
	ret (0.3862)
	tra (0.369276)
	eru (0.360144)
	ebs (0.354904)
	sin (0.349895)
	rec (0.346141)
	ecc (0.345105)
	csp (0.322373)
	sme (0.305437)
	bfe (0.299715)
	fat (0.294855)
	ssp (0.271039)
	ste (0.270416)
	sug (0.254582)
	pan (0.23596)
	aor (0.195274)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	fty (0.17584)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	lun (0.150489)
	lnt (0.142308)
	nca (0.136874)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	med (0.116252)
	nbm (0.0993246)
	jej (0.0989218)