Ss1.1-rfat0129_d23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGAGGTCGAACTGGCTATGCAACAGATTTGTGCCAATGTCATGGAATATTGCCAGTCA CTCATGTTACAGAGTTCCCCTACCTTTCAGCATGGTGTGTGTCTCTTTACCCCTAGCCTG TCCGAAACCAGTAATAGAGATGGGCCTCGGCAAGACACCCAAGCTCCAGTGGTTCCATAC TGGCGGCTGCCTGGTTTGGGCATTATTGTCTACCTGCTGAAACAGAGTGCTAATGATTTC TTCAGCTACTATGACAGTCATCGACGGAGTGTCAACAAGCTGCAGAATGTGGAGCAACTT CCCCCAGATGAGATAAAAGAGTTGTGCCAGTCTGTGATGCCTGCTGGTGTTGATAAAATC TCCACTGCCCAGAAATATGTTTTAGCAAGAAGGCGTTTGGTGAAGCTGATCAACAATAGG GCTAAACTGCTCTCCCTTTGTTCCTTTATCATAGAAACCTGCCTGTTCATTCTCTGGCGC CATCTGGAGTACTACTTGTTACACTGCACACCCACGGATTCTCAAGAGTCCTTGTTTGCC TCCAGGACCTTATTTAAAAGCAGAAGACTGCAAGATTCCTTCACTTCAGAAAGCAATCTG GATTTTAGAAGTGGGCTGACTATAGTGAGCCAACATGATTTAGACCAGCTTCAGGCTGAC ACCATCAATGCTTTTGGAGAATCACTGCAGAAGAAACTTCTGGACATTGAAGGATTGTAT TCAAAAGTTCGATCCCGCTACAGTTTCATACAAGCTCTTGTCAGACGTGTCCGAGGCCTA CTGAGGATATCACGGAACTGAGCACCCGTGCTTTTACTCTTCTCAGGAAGAGATGAATTG GGGAAGACTGTCTCCTTTTTATAATTTCTTTCTAAATTATGACCAAAAGATATTTTGCTA TTTCTTTCTTTATATATGGACTTCTTTTCTGTAAATTTCTTTGCCTGGTTCCATCCTCAC TAGTAAAAAAAATAAATACTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGAGGTCGAACTGGCTATGCAACAGATTTGTGCCAATGTCATGGAATATTGCCAGTCA CTCATGTTACAGAGTTCCCCTACCTTTCAGCATGGTGTGTGTCTCTTTACCCCTAGCCTG TCCGAAACCAGTAATAGAGATGGGCCTCGGCAAGACACCCAAGCTCCAGTGGTTCCATAC TGGCGGCTGCCTGGTTTGGGCATTATTGTCTACCTGCTGAAACAGAGTGCTAATGATTTC TTCAGCTACTATGACAGTCATCGACGGAGTGTCAACAAGCTGCAGAATGTGGAGCAACTT CCCCCAGATGAGATAAAAGAGTTGTGCCAGTCTGTGATGCCTGCTGGTGTTGATAAAATC TCCACTGCCCAGAAATATGTTTTAGCAAGAAGGCGTTTGGTGAAGCTGATCAACAATAGG GCTAAACTGCTCTCCCTTTGTTCCTTTATCATAGAAACCTGCCTGTTCATTCTCTGGCGC CATCTGGAGTACTACTTGTTACACTGCACACCCACGGATTCTCAAGAGTCCTTGTTTGCC TCCAGGACCTTATTTAAAAGCAGAAGACTGCAAGATTCCTTCACTTCAGAAAGCAATCTG GATTTTAGAAGTGGGCTGACTATAGTGAGCCAACATGATTTAGACCAGCTTCAGGCTGAC ACCATCAATGCTTTTGGAGAATCACTGCAGAAGAAACTTCTGGACATTGAAGGATTGTAT TCAAAAGTTCGATCCCGCTACAGTTTCATACAAGCTCTTGTCAGACGTGTCCGAGGCCTA CTGAGGATATCACGGAACTGAGCACCCGTGCTTTTACTCTTCTCAGGAAGAGATGAATTG GGGAAGACTGTCTCCTTTTTATAATTTCTTTCTAAATTATGACCAAAAGATATTTTGCTA TTTCTTTCTTTATATATGGACTTCTTTTCTGTAAATTTCTTTGCCTGGTTCCATCCTCAC TAGTAAAAAAAATAAATACTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 153-326, gnl|bosTau2|chr4 (56318744-56318571) | |
| 153-326, gnl|Hg17|chr7 (134785193-134785366) | |
| 153-326, gnl|Mm7|chr6 (35175020-35175193) | |
| 448-574, gnl|bosTau2|chr4 (56316428-56316302) | |
| 448-574, gnl|canFam2|chr16 (15562658-15562519) | |
| 448-574, gnl|dasNov1|scaffold_15391 (73400-73261) | |
| 448-574, gnl|echTel1|scaffold_279209 (104532-104671) | |
| 448-574, gnl|fr1|chrUn (175924192-175924319) | |
| 448-574, gnl|galGal2|chr1 (44471368-44471229) | |
| 448-574, gnl|hg17|chr7 (134787468-134787607) | |
| 448-574, gnl|Hg17|chr7 (134787473-134787599) | |
| 448-574, gnl|loxAfr1|scaffold_3923 (25069-24930) | |
| 448-574, gnl|mm7|chr6 (35176449-35176587) | |
| 448-574, gnl|Mm7|chr6 (35176453-35176579) | |
| 448-574, gnl|monDom2|scaffold_22 (7904472-7904333) | |
| 448-574, gnl|oryCun1|scaffold_145494 (10504-10645) | |
| 448-574, gnl|panTro1|chr6 (137491610-137491749) | |
| 448-574, gnl|rheMac2|chr3 (173160411-173160550) | |
| 448-574, gnl|rn3|chr4 (62929416-62929554) | |
| 448-574, gnl|tetNig1|chr13 (1691232-1691333) | |
| 448-574, gnl|xenTro1|scaffold_447 (92503-92636) | |
| 647-984, gnl|bosTau2|chr4 (56315089-56314753) | |
| 647-984, gnl|Hg17|chr7 (134790405-134790744) | |
| 647-984, gnl|Mm7|chr6 (35178462-35178793) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-326, gnl|bosTau2|chr4 (56318744-56318571) | |
| 153-326, gnl|Hg17|chr7 (134785193-134785366) | |
| 153-326, gnl|Mm7|chr6 (35175020-35175193) | |
| 448-574, gnl|bosTau2|chr4 (56316428-56316302) | |
| 448-574, gnl|canFam2|chr16 (15562658-15562519) | |
| 448-574, gnl|dasNov1|scaffold_15391 (73400-73261) | |
| 448-574, gnl|echTel1|scaffold_279209 (104532-104671) | |
| 448-574, gnl|fr1|chrUn (175924192-175924319) | |
| 448-574, gnl|galGal2|chr1 (44471368-44471229) | |
| 448-574, gnl|hg17|chr7 (134787468-134787607) | |
| 448-574, gnl|Hg17|chr7 (134787473-134787599) | |
| 448-574, gnl|loxAfr1|scaffold_3923 (25069-24930) | |
| 448-574, gnl|mm7|chr6 (35176449-35176587) | |
| 448-574, gnl|Mm7|chr6 (35176453-35176579) | |
| 448-574, gnl|monDom2|scaffold_22 (7904472-7904333) | |
| 448-574, gnl|oryCun1|scaffold_145494 (10504-10645) | |
| 448-574, gnl|panTro1|chr6 (137491610-137491749) | |
| 448-574, gnl|rheMac2|chr3 (173160411-173160550) | |
| 448-574, gnl|rn3|chr4 (62929416-62929554) | |
| 448-574, gnl|tetNig1|chr13 (1691232-1691333) | |
| 448-574, gnl|xenTro1|scaffold_447 (92503-92636) | |
| 647-984, gnl|bosTau2|chr4 (56315089-56314753) | |
| 647-984, gnl|Hg17|chr7 (134790405-134790744) | |
| 647-984, gnl|Mm7|chr6 (35178462-35178793) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| pro (0.512033) | |
| fat (0.442282) | |
| ebs (0.354904) | |
| csk (0.281492) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| col (0.195008) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| spl (0.143184) | |
| ova (0.129132) | |
| spc (0.113366) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| fat (0.442282) | |
| ebs (0.354904) | |
| csk (0.281492) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| col (0.195008) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| spl (0.143184) | |
| ova (0.129132) | |
| spc (0.113366) |