Non-Coding RNA Search

Ss1.1-rfat0129_i22.5

Sequence:


               
               GCAAACAAATTATTTTTTACAAAAAAATAAATAAAATAAATAAAATTAGACTTCCTTCCC
TCACTATATATCTTTATTCAGTCAGAATATTTCTGAGAGCATTTTTGCAAATTAGAGCAG
GAAGAACTTTTCTGTTTACAGTGCACATCTGTTGTAATGCAAAGCATATTTGGCAAGCAG
TTCATCACGAAGACAGTAGCTATGATTCTAGAAGTCAAGAGGTGTCAATAGAACTAGTGG
GGCTTCTGCATGTTAAAAATGGTATCCCATAGGTGTGAAAGTGCTGAATGCTCGTCTGAT
CTCCACGTGGGCACCCGCACTACCAATTTTTAAAAGAAACTCACTCCCTTATAGAAAGAA
TCGAAAGGTCAAGTTATTTTGAAGCGATTTTTTAAAAAGCCTCTTCTGTTTATTAACAGG
AAAGTTTATTTATTTGACAGGATTTTAAGTAATGTAGGAATATATGAGGTAAATTAGCAC
ATATAATTTTTTTTTAAATTTATGATCCATTTTGTATGGTCTCAAAGTTGGATGACCTCA
TTACTAATATTTGTTGTAAAAGTGAAACTTGTTTGCCAACCAATAAACAACTGATTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAACAAATTATTTTTTACAAAAAAATAAATAAAATAAATAAAATTAGACTTCCTTCCC
TCACTATATATCTTTATTCAGTCAGAATATTTCTGAGAGCATTTTTGCAAATTAGAGCAG
GAAGAACTTTTCTGTTTACAGTGCACATCTGTTGTAATGCAAAGCATATTTGGCAAGCAG
TTCATCACGAAGACAGTAGCTATGATTCTAGAAGTCAAGAGGTGTCAATAGAACTAGTGG
GGCTTCTGCATGTTAAAAATGGTATCCCATAGGTGTGAAAGTGCTGAATGCTCGTCTGAT
CTCCACGTGGGCACCCGCACTACCAATTTTTAAAAGAAACTCACTCCCTTATAGAAAGAA
TCGAAAGGTCAAGTTATTTTGAAGCGATTTTTTAAAAAGCCTCTTCTGTTTATTAACAGG
AAAGTTTATTTATTTGACAGGATTTTAAGTAATGTAGGAATATATGAGGTAAATTAGCAC
ATATAATTTTTTTTTAAATTTATGATCCATTTTGTATGGTCTCAAAGTTGGATGACCTCA
TTACTAATATTTGTTGTAAAAGTGAAACTTGTTTGCCAACCAATAAACAACTGATTGAGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-600, gnl|bosTau2|chr6 (22716295-22716894)
               

               
               1-600, gnl|Hg17|chr4 (62766320-62766918)
               

               
               1-600, gnl|Mm7|chr5 (81729598-81730202)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr6 (22716295-22716894)
               

               
               1-600, gnl|Hg17|chr4 (62766320-62766918)
               

               
               1-600, gnl|Mm7|chr5 (81729598-81730202)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fat (0.294855)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               thg (0.126791)

	1-600, gnl\|bosTau2\|chr6 (22716295-22716894)
	1-600, gnl\|Hg17\|chr4 (62766320-62766918)
	1-600, gnl\|Mm7\|chr5 (81729598-81730202)