Non-Coding RNA Search

Ss1.1-rfat0130_j5.5

Sequence:


               
               CGAGGCAGATGCCAAAAAGTGCATCGCTATGGCCCCCCACGTCGAGGTTGAATCACGTGT
AGCGCCAAGCTTTAACCAGGAAGACATTTACATCACCACAGAAAGCCTTACCACTACTGC
TGGCAGGTCTGGGACAGCAGAATGTGCTCCAAGTTCTGAGATGCCTGTCCCAGACTATAC
CTCCATTCATATAGTACAGTCTCCACAGGGCCTCGTACTCAATGCCACAGCCCTGCCCTT
GCCTGACAAAGAGTTTCTCTCATCGTGTGGCTATGTGAGCACAGACCAACTGAACAAAAT
CATGCCGTAGCTTTTCTTCAATTTTCCATGAGCTACCTGTTTAATGGCAAAGGGTTGGCT
GGGGCCTGAATGCTTAAACCAAAACAATGTTTAAACCTTTTGCGGGGGTGGGGGTGGGGG
TTCAGGGTAAGGGATAAATGCCTTTTTCTGAAATGTTAAAATACGGTATTAAAAAAAGAA
GAATCCTTAATCAGATAGATATTCCTATTGTGAATTGTAAATATTTTTAAGAATTGTCTC
AAAGACCGTGTAGTGGCAGTGAATGTCTTGTTATTGTGGGTGTTAATTTTGTGCTACTAA
GCATTGAATGGCTATGTTTTTAATGTATAGTAAATCATGCTTTTTGAAAAAGCAAAAAAT
CAGGTGGCTTTTGCAGTTCAGGAAGATTGAATGCACATCATAGCACAGGCTAATTTTTTT
AATAATTGGGAACTAAAATCATAGGTAAGAAAATAGTTTGGATATGTAAAACATTTATTT
TGACATAAAATGGATAAAGATATTTTTAATAACTTACACTTTAGGCATGGCTATTTTCTA
TTACACTACACACTGTGTCCTGTAGTTAATGCGGGCTCATCTAAAGAATGTAGAACTGCC
ATCTAAAGCTGGTTTAATGCTTTGGTCAATGCACCTGAAGAAAAACAAGTTAGTTTTTTA
CAAGGCCCTTTTTATACCTCCTAAAACTCTTTAAATGATTCTAAAATGATTGTAGTTACC
TACAGTATTGGAATGTACTCATCTGAATTTTTAAACAAATATTTGTTAATTCAGAAAACC
TTAAAATGTTTGCACAGGTCAACTTACCATGACCCCAACTCTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGCAGATGCCAAAAAGTGCATCGCTATGGCCCCCCACGTCGAGGTTGAATCACGTGT
AGCGCCAAGCTTTAACCAGGAAGACATTTACATCACCACAGAAAGCCTTACCACTACTGC
TGGCAGGTCTGGGACAGCAGAATGTGCTCCAAGTTCTGAGATGCCTGTCCCAGACTATAC
CTCCATTCATATAGTACAGTCTCCACAGGGCCTCGTACTCAATGCCACAGCCCTGCCCTT
GCCTGACAAAGAGTTTCTCTCATCGTGTGGCTATGTGAGCACAGACCAACTGAACAAAAT
CATGCCGTAGCTTTTCTTCAATTTTCCATGAGCTACCTGTTTAATGGCAAAGGGTTGGCT
GGGGCCTGAATGCTTAAACCAAAACAATGTTTAAACCTTTTGCGGGGGTGGGGGTGGGGG
TTCAGGGTAAGGGATAAATGCCTTTTTCTGAAATGTTAAAATACGGTATTAAAAAAAGAA
GAATCCTTAATCAGATAGATATTCCTATTGTGAATTGTAAATATTTTTAAGAATTGTCTC
AAAGACCGTGTAGTGGCAGTGAATGTCTTGTTATTGTGGGTGTTAATTTTGTGCTACTAA
GCATTGAATGGCTATGTTTTTAATGTATAGTAAATCATGCTTTTTGAAAAAGCAAAAAAT
CAGGTGGCTTTTGCAGTTCAGGAAGATTGAATGCACATCATAGCACAGGCTAATTTTTTT
AATAATTGGGAACTAAAATCATAGGTAAGAAAATAGTTTGGATATGTAAAACATTTATTT
TGACATAAAATGGATAAAGATATTTTTAATAACTTACACTTTAGGCATGGCTATTTTCTA
TTACACTACACACTGTGTCCTGTAGTTAATGCGGGCTCATCTAAAGAATGTAGAACTGCC
ATCTAAAGCTGGTTTAATGCTTTGGTCAATGCACCTGAAGAAAAACAAGTTAGTTTTTTA
CAAGGCCCTTTTTATACCTCCTAAAACTCTTTAAATGATTCTAAAATGATTGTAGTTACC
TACAGTATTGGAATGTACTCATCTGAATTTTTAAACAAATATTTGTTAATTCAGAAAACC
TTAAAATGTTTGCACAGGTCAACTTACCATGACCCCAACTCTAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16303678|gb|AAL14718.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16303678|gb|AAL14718.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.949518
               

               
               626-719, + strand, RNAz p=0.976159

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.949518
               

               
               626-719, + strand, RNAz p=0.976159

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000163, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000163, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1118, gnl|bosTau2|chr20 (18319844-18318717)
               

               
               1-1118, gnl|Hg17|chr5 (42754974-42756145)
               

               
               1-1118, gnl|Mm7|chr15 (3145912-3144797)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1118, gnl|bosTau2|chr20 (18319844-18318717)
               

               
               1-1118, gnl|Hg17|chr5 (42754974-42756145)
               

               
               1-1118, gnl|Mm7|chr15 (3145912-3144797)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fat (0.737137)
               

               
               sme (0.610874)
               

               
               ldo (0.38801)
               

               
               ste (0.270416)
               

               
               eep (0.245128)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.737137)
               

               
               sme (0.610874)
               

               
               ldo (0.38801)
               

               
               ste (0.270416)
               

               
               eep (0.245128)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	120-239, - strand, RNAz p=0.949518
	626-719, + strand, RNAz p=0.976159

	1-1118, gnl\|bosTau2\|chr20 (18319844-18318717)
	1-1118, gnl\|Hg17\|chr5 (42754974-42756145)
	1-1118, gnl\|Mm7\|chr15 (3145912-3144797)

	fat (0.737137)
	sme (0.610874)
	ldo (0.38801)
	ste (0.270416)
	eep (0.245128)
	cbe (0.239234)
	aor (0.195274)
	nje (0.16592)
	ski (0.146735)
	liv (0.146284)
	kid (0.129735)
	ret (0.128733)