Non-Coding RNA Search

Ss1.1-rfat0130_n19.5

Sequence:


               
               TTTGAGGGTTTGCAGCATTTAGTATTTCTCTACGCATTTTCTAACAGAAAGAAGGTATTA
TCTTCACCTAGAACTCTACTGTTTGCTTGAGAAAAAAAAAATAATAGTTGTCTTTCTCTT
TTCCCTTATTCCCACAAATGGTTGTTAGTAGGTTTCATTTCTTGTATTCATAGCCAGCCC
GCCAAAGCTCCAATGTTTGTTCGTTTGTTTGTTTGCATATGTTAGGGCTCCATTCTCACT
CATCCCCGCAACATATCCATATATATGTATATATATATATATTCCCTCCACTCCTCCTAC
TTCCCCCAAATTTCCAGTTTGGAAATGAGAAGTCCCCCTCCCGTGTTTCTGTCCTCACAC
AGGTAGACTCAGATTACTGGTAGGAACTTGAGAACTTTAGAGCACAAGTTCTCTAAACAG
TCATCCGTTTGTTCTCATAAGGCTACTTCCAGTTCCTGCTCTTAGGGGAAGGGAGAGCAG
AGATCCCTGCTCTTTACAGGTTGGGGCAAAAAGTGGCAACGTGCTGGCACCACAGTGGAG
GAGCACTATGCCCCCGGGAATTTTTGAGGAAGTTGGAGTTCATGGCAGTGGGAGATGTCA
AGGGGTTTCTTCCCTGTGCTTTTGAGGTCAGGTTGAGGCCGGGAGACAGGCATGGTGTTC
TGTTTTGTCTTACTCTTCTCTAAAAAGAATATTTGATTTTCCCGTGTAAGGATGAGATTA
CTTCCTAGCCAGGTCTTATAATTCTGAGAAACAAAACACCTAAGTGCCTCGACCAAAGCC
ATTTTTCCTGTCATCCGATTTAGATGGCATTGGGGAGGATACTTTGATATTCTGATCACC
CAAGGAACAACGGCAGTCCTGCAGCCTGGGAGAGGGGAAATTGTGTGTTTTGTTTCCATC
TTGCTCTTGTAGCAGTAAACTAGTTGAGGGAAAGGGGGGGCAGTGAATTATGGGAGTACC
TATGGTGTTTTATAATGGCTGCAAAGTGATCCCCAGGTCCTGAGAGCTTTAATACATCAG
TGGAATTCCCATGACCTATAGGAAACGAGTAGATTCATGTACTCTTTTATGTCTAACCTG
TATGGATTTTTTTTCTCCACATATCTAAGTAAACTCATTATAAGAATGGTCATTCTTATT
CTTTCATTCAAATAAGTTTTTTCTTCATCTGGGCACTGAAGGGATACGTGAAACAAAGTT
AACATTTTTGGTAATGCCTTCCGCTGGGGATCATTTTGTTTAGCTTCTTATAGGAAAGCT
TGAGTAAAATAAATATTGTCTTTTTGTATGTCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGGGTTTGCAGCATTTAGTATTTCTCTACGCATTTTCTAACAGAAAGAAGGTATTA
TCTTCACCTAGAACTCTACTGTTTGCTTGAGAAAAAAAAAATAATAGTTGTCTTTCTCTT
TTCCCTTATTCCCACAAATGGTTGTTAGTAGGTTTCATTTCTTGTATTCATAGCCAGCCC
GCCAAAGCTCCAATGTTTGTTCGTTTGTTTGTTTGCATATGTTAGGGCTCCATTCTCACT
CATCCCCGCAACATATCCATATATATGTATATATATATATATTCCCTCCACTCCTCCTAC
TTCCCCCAAATTTCCAGTTTGGAAATGAGAAGTCCCCCTCCCGTGTTTCTGTCCTCACAC
AGGTAGACTCAGATTACTGGTAGGAACTTGAGAACTTTAGAGCACAAGTTCTCTAAACAG
TCATCCGTTTGTTCTCATAAGGCTACTTCCAGTTCCTGCTCTTAGGGGAAGGGAGAGCAG
AGATCCCTGCTCTTTACAGGTTGGGGCAAAAAGTGGCAACGTGCTGGCACCACAGTGGAG
GAGCACTATGCCCCCGGGAATTTTTGAGGAAGTTGGAGTTCATGGCAGTGGGAGATGTCA
AGGGGTTTCTTCCCTGTGCTTTTGAGGTCAGGTTGAGGCCGGGAGACAGGCATGGTGTTC
TGTTTTGTCTTACTCTTCTCTAAAAAGAATATTTGATTTTCCCGTGTAAGGATGAGATTA
CTTCCTAGCCAGGTCTTATAATTCTGAGAAACAAAACACCTAAGTGCCTCGACCAAAGCC
ATTTTTCCTGTCATCCGATTTAGATGGCATTGGGGAGGATACTTTGATATTCTGATCACC
CAAGGAACAACGGCAGTCCTGCAGCCTGGGAGAGGGGAAATTGTGTGTTTTGTTTCCATC
TTGCTCTTGTAGCAGTAAACTAGTTGAGGGAAAGGGGGGGCAGTGAATTATGGGAGTACC
TATGGTGTTTTATAATGGCTGCAAAGTGATCCCCAGGTCCTGAGAGCTTTAATACATCAG
TGGAATTCCCATGACCTATAGGAAACGAGTAGATTCATGTACTCTTTTATGTCTAACCTG
TATGGATTTTTTTTCTCCACATATCTAAGTAAACTCATTATAAGAATGGTCATTCTTATT
CTTTCATTCAAATAAGTTTTTTCTTCATCTGGGCACTGAAGGGATACGTGAAACAAAGTT
AACATTTTTGGTAATGCCTTCCGCTGGGGATCATTTTGTTTAGCTTCTTATAGGAAAGCT
TGAGTAAAATAAATATTGTCTTTTTGTATGTCACCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-543, gnl|bosTau2|chrX (963756-963214)
               

               
               1-543, gnl|Hg17|chrX (117709109-117709674)
               

               
               1-543, gnl|Mm7|chrX (30929755-30930298)
               


               
               566-1295, gnl|bosTau2|chrX (963216-962465)
               

               
               566-1295, gnl|Hg17|chrX (117709672-117710380)
               

               
               566-1295, gnl|Mm7|chrX (30930284-30931021)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-543, gnl|bosTau2|chrX (963756-963214)
               

               
               1-543, gnl|Hg17|chrX (117709109-117709674)
               

               
               1-543, gnl|Mm7|chrX (30929755-30930298)
               


               
               566-1295, gnl|bosTau2|chrX (963216-962465)
               

               
               566-1295, gnl|Hg17|chrX (117709672-117710380)
               

               
               566-1295, gnl|Mm7|chrX (30930284-30931021)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               amn (0.835422)
               

               
               cag (0.604778)
               

               
               ste (0.405625)
               

               
               sme (0.305437)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               cag (0.604778)
               

               
               ste (0.405625)
               

               
               sme (0.305437)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	1-543, gnl\|bosTau2\|chrX (963756-963214)
	1-543, gnl\|Hg17\|chrX (117709109-117709674)
	1-543, gnl\|Mm7\|chrX (30929755-30930298)

	566-1295, gnl\|bosTau2\|chrX (963216-962465)
	566-1295, gnl\|Hg17\|chrX (117709672-117710380)
	566-1295, gnl\|Mm7\|chrX (30930284-30931021)

	amn (0.835422)
	cag (0.604778)
	ste (0.405625)
	sme (0.305437)
	nms (0.213858)
	mas (0.210305)
	cty (0.20816)
	aor (0.195274)
	nep (0.183925)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	cli (0.152812)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	cbl (0.114797)
	jej (0.0989218)