Non-Coding RNA Search

Ss1.1-rfat0136_p24.5

Sequence:


               
               AACAAGAGACATTTTAATAATTGCTTTCTAGCAATCAGCTTTTATTTGCCTTAATGTAAG
CTTTTAAGCAGTTATCTAACTAGTGTTCACTAGCCTGTAACCATAGTTCCACATCTTCAG
CTTAGACTGTCATCTAACATACCTGGGATGTTTTTGGCAGAAATGGGCTTTTGTCTCACT
CGAACATGGCGTATTTTATAGCGGTGTTTATCAGGCCAAATTTCATGTCGACTTTGAGTT
TTTAAACTAACCACAAATCTGGTAAAAAGCTCTGAACGTCACAAGATATCGTGTGTGAGA
GCATGTGTGTGTGTGTGATTGTGTGTGCGTGTGCATGTGCGCTTACGGTAACTACTTTTC
GTTTTAATCGGTTGAGTACTGTTACCGTGATGGTCATTGTGCTGCAGTATTGACTTGGAA
TCTTGATGGTGTTCATTCTAAAATCCAGTCCTCAGCTAACAGATCACCTTTGCAAAAAGT
CATCATGGGATGAAATATTTAAGAAAGATGTTTTTCAAAAGGGAAGTAGTTTATAAGATG
TTTTAAAAGATTTTTTTTTCAGTTTTATAATTAAAATACTGTTTTCCATCTTTTCTTACT
TAGATCATTCTCTTAAATAAAATAAAGGTTTATTTTGGAGCCAAATTACATTGGCCATAT
ATTAAGTAGTTGCACATCCTCGTTGTTTTTCAGCTGATTTCAGCATCCTTTTTTAGTCTA
GTGTATGATTTTCTAACAGAAATTTAGATAACTAAATTATTCAGGTTACCAATTGCTCAC
AGAGTGATTTTCCTGGCGTTCCCATCATGGCTTAGCAGTTAGCGAACCCAACTAGCATCC
ATGAGGACGCAGGTTCGATCTCTGGCTTCACTCAGTGGGTTAAGGATCCGGCGTTGCCGT
GAGCTGTGATGTAAGTCACAGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAGAGACATTTTAATAATTGCTTTCTAGCAATCAGCTTTTATTTGCCTTAATGTAAG
CTTTTAAGCAGTTATCTAACTAGTGTTCACTAGCCTGTAACCATAGTTCCACATCTTCAG
CTTAGACTGTCATCTAACATACCTGGGATGTTTTTGGCAGAAATGGGCTTTTGTCTCACT
CGAACATGGCGTATTTTATAGCGGTGTTTATCAGGCCAAATTTCATGTCGACTTTGAGTT
TTTAAACTAACCACAAATCTGGTAAAAAGCTCTGAACGTCACAAGATATCGTGTGTGAGA
GCATGTGTGTGTGTGTGATTGTGTGTGCGTGTGCATGTGCGCTTACGGTAACTACTTTTC
GTTTTAATCGGTTGAGTACTGTTACCGTGATGGTCATTGTGCTGCAGTATTGACTTGGAA
TCTTGATGGTGTTCATTCTAAAATCCAGTCCTCAGCTAACAGATCACCTTTGCAAAAAGT
CATCATGGGATGAAATATTTAAGAAAGATGTTTTTCAAAAGGGAAGTAGTTTATAAGATG
TTTTAAAAGATTTTTTTTTCAGTTTTATAATTAAAATACTGTTTTCCATCTTTTCTTACT
TAGATCATTCTCTTAAATAAAATAAAGGTTTATTTTGGAGCCAAATTACATTGGCCATAT
ATTAAGTAGTTGCACATCCTCGTTGTTTTTCAGCTGATTTCAGCATCCTTTTTTAGTCTA
GTGTATGATTTTCTAACAGAAATTTAGATAACTAAATTATTCAGGTTACCAATTGCTCAC
AGAGTGATTTTCCTGGCGTTCCCATCATGGCTTAGCAGTTAGCGAACCCAACTAGCATCC
ATGAGGACGCAGGTTCGATCTCTGGCTTCACTCAGTGGGTTAAGGATCCGGCGTTGCCGT
GAGCTGTGATGTAAGTCACAGACG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-314, gnl|bosTau2|chr9 (49812894-49813218)
               

               
               1-314, gnl|Hg17|chr6 (148911932-148912262)
               

               
               1-314, gnl|Mm7|chr10 (8424729-8424285)
               


               
               320-671, gnl|bosTau2|chr9 (49813196-49813544)
               

               
               320-671, gnl|Hg17|chr6 (148912231-148912599)
               

               
               320-671, gnl|Mm7|chr10 (8424336-8423886)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-314, gnl|bosTau2|chr9 (49812894-49813218)
               

               
               1-314, gnl|Hg17|chr6 (148911932-148912262)
               

               
               1-314, gnl|Mm7|chr10 (8424729-8424285)
               


               
               320-671, gnl|bosTau2|chr9 (49813196-49813544)
               

               
               320-671, gnl|Hg17|chr6 (148912231-148912599)
               

               
               320-671, gnl|Mm7|chr10 (8424336-8423886)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               bla (0.248694)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               med (0.116252)

	1-314, gnl\|bosTau2\|chr9 (49812894-49813218)
	1-314, gnl\|Hg17\|chr6 (148911932-148912262)
	1-314, gnl\|Mm7\|chr10 (8424729-8424285)

	320-671, gnl\|bosTau2\|chr9 (49813196-49813544)
	320-671, gnl\|Hg17\|chr6 (148912231-148912599)
	320-671, gnl\|Mm7\|chr10 (8424336-8423886)

	bla (0.248694)
	cut (0.169924)
	fat (0.147427)
	csk (0.140746)
	cst (0.140036)
	ssp (0.13552)
	med (0.116252)