Non-Coding RNA Search

Ss1.1-rfat0138_c20.5

Sequence:


               
               CAAGCCACCATGTGTTTATTTTCATGCTTTGAACAGAGTTCCCTAGTAATTCCCATTTTC
TTAATACATGAGATACAGAGAACCTGAAATTAGTTTGGTGAAAAATCAACTGCGGAGTCT
TACTATATGGCAGTGAGATAAGGAGCAGGCGTTAAGCACTGAATCTAAGGCTACCAGCAA
CACAGTCCACGAGGAAAGTACTTTCATTTCAGAACCATGAGACGTTCTCTGATGCATTTT
CTTGGGACAGTCTGGCTTGACAGTTAAGCGTTGCTTGAGCACCTGGGCCAGAGGCTGTTC
TGGCTTCTTTGTGCCTTTGCTGTCTCACAGGGAGGCCTCTGATGGCAAGTCAGCTGAGCT
AGAATCCGCAAGGGGTGTGCGTGCAGATCGCAGCCCTGGGGGCCTGGTGCTTTGCTGAAG
GGAGGCCCCAGCTGGGGTGTGCAGGCCGGTGCTGCACGGAGCAGGCTTGTCTGCCCCGGT
CGTCGAGTGTTTTGCTGGTTTTCGGTGGCTTCTAGGTATCACACGAGGAGTCTGTTGACG
GGAGTGAGTGGGAAAGGGAGAAAGAAGCAGGCGCTGTGGGTTTGAGTCAGGGACGAAGCG
GGTCACTCACCAGGCTGGATGGAGGTTCGGCCGGTGCCCATCCCGCTGTGGGTGAGGAGT
GCTCTGAGCAGCCTGGCGGCTGCGCTGGACCCTCTCACGGGGCTCTGCACGTGGCCAGGC
AGAAGACACCGGGGAGCTTCCTGGGTGGGAGAGAGCCAGCGTCAGCTTCCAGGAAGGGGA
GGGCAGGGCCGAGCCTACTTCTGCCCGGACACCAGGACGGCCAGCTCCTGGATGGACATA
TCCTTGTTGACGTAGCGGTCGTACTGGGCAGGGGTCAGCCTTCCGCTCTGCAGGGCCTCT
TCGATGGAGAACTTCTTGCCTGACTTCCTGTCGTGGATCACGGAGGACTCCCCGTTGGGA
CCCTTGACGGAGATTTCCTCCCAGTCGCACTCCTGGCTCCTGAGTTTCACGAACATGTTC
CAGTCGATGAGGCCGGCCCGGTGGGCTTCCTCTGGAGACAGCTCGCGGCCGGAGTCGGGG
TCGATGACCACGATGGAGCGCCGCAGGTGGTTCTCCCTCTGCTCCCGCTTGACGGCCACG
GAGCCCAGGCGCCTCTGCAGCTCGTCGATCTCCAGGTCCTTGTCTCTGGAGAGCCTCTTG
AGCTCGTCCAGCTCCCGCTCCAGGGACCACAGCCTGGAGTCGAGCGGAGCGCCAGGGTCT
GCCACCGGCACACTCCTCAGGTCCCGCGTCTCCGCCGCAGCCATCTCAATCTCCACCTGG
AGCCTGCGGGCCTCGAGCTGCAGGTTCTGCCGCTCCAGCTGCAGTCTGTGGTTCTCCTCC
CTCAGGAAGTCCAGCTCCTTGGACGACTTGGAGTTGCAGAACTCCAGCTCCGAGAGCTTG
GCCTCCAGCCGGCTCACCTCAGCGTCCAGCTCCCTCTTGCTCCGGCTCTCCTCCTCCAGG
CTGCTCTTGAGCTTCTGAATCTCCTGCTCGGTGTTGCCTCTGTCCACCTGGACGCTCTCA
GAGAAGACCACCTTCTCCCGGACCTCCAGCTTCTCCAGGTGCTCCAGCTTCCTCCTCAGC
GTCTCCAGCTCGCTCTCCAGGACCTGCCGCCGGTGTCGCTCCTCCTCCAGCTGCAGTGTG
AGCAGGGCGTGCTCCCGGGCCTGCTGGGGGTCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCCACCATGTGTTTATTTTCATGCTTTGAACAGAGTTCCCTAGTAATTCCCATTTTC
TTAATACATGAGATACAGAGAACCTGAAATTAGTTTGGTGAAAAATCAACTGCGGAGTCT
TACTATATGGCAGTGAGATAAGGAGCAGGCGTTAAGCACTGAATCTAAGGCTACCAGCAA
CACAGTCCACGAGGAAAGTACTTTCATTTCAGAACCATGAGACGTTCTCTGATGCATTTT
CTTGGGACAGTCTGGCTTGACAGTTAAGCGTTGCTTGAGCACCTGGGCCAGAGGCTGTTC
TGGCTTCTTTGTGCCTTTGCTGTCTCACAGGGAGGCCTCTGATGGCAAGTCAGCTGAGCT
AGAATCCGCAAGGGGTGTGCGTGCAGATCGCAGCCCTGGGGGCCTGGTGCTTTGCTGAAG
GGAGGCCCCAGCTGGGGTGTGCAGGCCGGTGCTGCACGGAGCAGGCTTGTCTGCCCCGGT
CGTCGAGTGTTTTGCTGGTTTTCGGTGGCTTCTAGGTATCACACGAGGAGTCTGTTGACG
GGAGTGAGTGGGAAAGGGAGAAAGAAGCAGGCGCTGTGGGTTTGAGTCAGGGACGAAGCG
GGTCACTCACCAGGCTGGATGGAGGTTCGGCCGGTGCCCATCCCGCTGTGGGTGAGGAGT
GCTCTGAGCAGCCTGGCGGCTGCGCTGGACCCTCTCACGGGGCTCTGCACGTGGCCAGGC
AGAAGACACCGGGGAGCTTCCTGGGTGGGAGAGAGCCAGCGTCAGCTTCCAGGAAGGGGA
GGGCAGGGCCGAGCCTACTTCTGCCCGGACACCAGGACGGCCAGCTCCTGGATGGACATA
TCCTTGTTGACGTAGCGGTCGTACTGGGCAGGGGTCAGCCTTCCGCTCTGCAGGGCCTCT
TCGATGGAGAACTTCTTGCCTGACTTCCTGTCGTGGATCACGGAGGACTCCCCGTTGGGA
CCCTTGACGGAGATTTCCTCCCAGTCGCACTCCTGGCTCCTGAGTTTCACGAACATGTTC
CAGTCGATGAGGCCGGCCCGGTGGGCTTCCTCTGGAGACAGCTCGCGGCCGGAGTCGGGG
TCGATGACCACGATGGAGCGCCGCAGGTGGTTCTCCCTCTGCTCCCGCTTGACGGCCACG
GAGCCCAGGCGCCTCTGCAGCTCGTCGATCTCCAGGTCCTTGTCTCTGGAGAGCCTCTTG
AGCTCGTCCAGCTCCCGCTCCAGGGACCACAGCCTGGAGTCGAGCGGAGCGCCAGGGTCT
GCCACCGGCACACTCCTCAGGTCCCGCGTCTCCGCCGCAGCCATCTCAATCTCCACCTGG
AGCCTGCGGGCCTCGAGCTGCAGGTTCTGCCGCTCCAGCTGCAGTCTGTGGTTCTCCTCC
CTCAGGAAGTCCAGCTCCTTGGACGACTTGGAGTTGCAGAACTCCAGCTCCGAGAGCTTG
GCCTCCAGCCGGCTCACCTCAGCGTCCAGCTCCCTCTTGCTCCGGCTCTCCTCCTCCAGG
CTGCTCTTGAGCTTCTGAATCTCCTGCTCGGTGTTGCCTCTGTCCACCTGGACGCTCTCA
GAGAAGACCACCTTCTCCCGGACCTCCAGCTTCTCCAGGTGCTCCAGCTTCCTCCTCAGC
GTCTCCAGCTCGCTCTCCAGGACCTGCCGCCGGTGTCGCTCCTCCTCCAGCTGCAGTGTG
AGCAGGGCGTGCTCCCGGGCCTGCTGGGGGTCCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12852711|dbj|BAB29510.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12852711|dbj|BAB29510.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               389-483, - strand, RNAz p=0.617655
               

               
               774-893, - strand, RNAz p=0.505746
               

               
               1325-1444, - strand, RNAz p=0.816181
               

               
               1485-1604, - strand, RNAz p=0.727347

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-483, - strand, RNAz p=0.617655
               

               
               774-893, - strand, RNAz p=0.505746
               

               
               1325-1444, - strand, RNAz p=0.816181
               

               
               1485-1604, - strand, RNAz p=0.727347

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_002705, -
               

               
               5' of NM_002705, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002705, -
               

               
               5' of NM_002705, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-1716, gnl|bosTau2|chr25 (4770953-4772717)
               

               
               1-1716, gnl|Hg17|chr16 (4872526-4874307)
               


               
               773-1087, gnl|bosTau2|chr19 (49571117-49570804)
               

               
               773-1087, gnl|Hg17|chr17 (71515505-71515818)
               

               
               773-1087, gnl|Mm7|chr11 (116330529-116330842)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1716, gnl|bosTau2|chr25 (4770953-4772717)
               

               
               1-1716, gnl|Hg17|chr16 (4872526-4874307)
               


               
               773-1087, gnl|bosTau2|chr19 (49571117-49570804)
               

               
               773-1087, gnl|Hg17|chr17 (71515505-71515818)
               

               
               773-1087, gnl|Mm7|chr11 (116330529-116330842)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ton (0.526501)
               

               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

	389-483, - strand, RNAz p=0.617655
	774-893, - strand, RNAz p=0.505746
	1325-1444, - strand, RNAz p=0.816181
	1485-1604, - strand, RNAz p=0.727347

	1-1716, gnl\|bosTau2\|chr25 (4770953-4772717)
	1-1716, gnl\|Hg17\|chr16 (4872526-4874307)

	773-1087, gnl\|bosTau2\|chr19 (49571117-49570804)
	773-1087, gnl\|Hg17\|chr17 (71515505-71515818)
	773-1087, gnl\|Mm7\|chr11 (116330529-116330842)

	ton (0.526501)
	fat (0.294855)
	ute (0.265569)
	mas (0.210305)
	nlu (0.191681)
	nmm (0.132802)
	jca (0.11396)