Non-Coding RNA Search

Ss1.1-rfat0138_i21.5.5

Sequence:


               
               TTCTTCTCAGTAGAAAAAAAAGCTGATGGAAGATCACTGTAGTTCACATTCCCAGACCCA
AGCACCTACTCTTTGGAAATGACTGTGGGGTTAGTTTTAATTCCACAGGTCGTCAGATGC
CTGCTTTATAGCTGATGATCAAAACCAACTTTTATCTTTCTATTCTAATTGTTTTCAATG
GATCTGATCCATACCATAACCCTACACAAGGCTGGATGGGGTTCTTAGGCCAAGGGCCCC
AGTGTATGTGTGGATGTGTAGGGTGGGAGGGCGGGGAGTAAGGAATACTTTTTTCAAGGT
TCTAAAGCTGAATTCAAATGACGCATTAATGACCCAGAAACTCAGATCTGATCGAATCTG
AATTTCTAACAGGCCTTGCTTTGTAGGTGTACTGACAACTTATCTGGGGGCCTTACATCT
TTTTTAATCGGTGTTACGTCCGAGCCTGCTCTGCTCCCTCACTCCCTCTGCACTCCCTCT
GTGGCGTTCCCTTGCCCCTGAGAGCCTGCAGAAGTGGCTGGTAGAAGTGGGGGGCTGGCT
GGAGAATTATCAGTATGCAGGATTCCTTTCTGGGCTTTGTTTTGGAAACTTTCCTTAGGG
CTGTTTTTATTAAGTGCCCACATTTGACGGAAGGTGGAAGGAATTTGAATGTATTTGATT
TATAATGTTATTATTATTATTTTTTTAGATTAAAAGATGGTTGTAGCATTTAAAACGGAA
ACCTTTTCTCCTGGTTAGCTAGTATCCTGAGTGTATTCTCTGTAAGTGTAGCTCAAATGG
GTCAGCGTGAAGAAAAGTTAAAGAAAGCACGATGTCAAGGTTACACGGGTGGTTAAGGCC
AGGGCCTCTCCTACCACTGTGCCACTGACTTGCTATGTGACCCTGGGCAAGTCATTTAAC
TATAATGTGCCTCAGTTTTCCTTCTGTTAAAATGGGATAATAATACTGACCTACCTCAAA
GGGCAGTTTTGAGGCGTGACTAATGCTTTTTATAAAGCATTTTGGGATCCTTCAGCAGAG
GAATTCTCTTAAGTCCTGAGTATTTTTATAATAACAGTATCCACCATGAACTGTGTCCAC
CATGAACCCTGTGTCCTGGATGCTGTCATTAATCTTTATGGTTCTCTCTGAGAAATTGAA
TAAACCCAATAGATAAGTGGTGGATAACTAGTCAGACAGAATCTGAGAATGCATAAACTC
ATTGCCATGGAAACATACACAGGATACCTTTTCCTTGATTGGGTGGGATTTTTTCCCCTT
TTTATGTGGGATAGTAGTTATTTGTGGCCTAAGAATAATTTTGGAATAATTTCTATTAAT
ATCAACTCTGAAGCTAGTTGTACTGATCTGAGATTGTGTTTGTTCATAATAAAAGGGAAG
TGAATCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTCTCAGTAGAAAAAAAAGCTGATGGAAGATCACTGTAGTTCACATTCCCAGACCCA
AGCACCTACTCTTTGGAAATGACTGTGGGGTTAGTTTTAATTCCACAGGTCGTCAGATGC
CTGCTTTATAGCTGATGATCAAAACCAACTTTTATCTTTCTATTCTAATTGTTTTCAATG
GATCTGATCCATACCATAACCCTACACAAGGCTGGATGGGGTTCTTAGGCCAAGGGCCCC
AGTGTATGTGTGGATGTGTAGGGTGGGAGGGCGGGGAGTAAGGAATACTTTTTTCAAGGT
TCTAAAGCTGAATTCAAATGACGCATTAATGACCCAGAAACTCAGATCTGATCGAATCTG
AATTTCTAACAGGCCTTGCTTTGTAGGTGTACTGACAACTTATCTGGGGGCCTTACATCT
TTTTTAATCGGTGTTACGTCCGAGCCTGCTCTGCTCCCTCACTCCCTCTGCACTCCCTCT
GTGGCGTTCCCTTGCCCCTGAGAGCCTGCAGAAGTGGCTGGTAGAAGTGGGGGGCTGGCT
GGAGAATTATCAGTATGCAGGATTCCTTTCTGGGCTTTGTTTTGGAAACTTTCCTTAGGG
CTGTTTTTATTAAGTGCCCACATTTGACGGAAGGTGGAAGGAATTTGAATGTATTTGATT
TATAATGTTATTATTATTATTTTTTTAGATTAAAAGATGGTTGTAGCATTTAAAACGGAA
ACCTTTTCTCCTGGTTAGCTAGTATCCTGAGTGTATTCTCTGTAAGTGTAGCTCAAATGG
GTCAGCGTGAAGAAAAGTTAAAGAAAGCACGATGTCAAGGTTACACGGGTGGTTAAGGCC
AGGGCCTCTCCTACCACTGTGCCACTGACTTGCTATGTGACCCTGGGCAAGTCATTTAAC
TATAATGTGCCTCAGTTTTCCTTCTGTTAAAATGGGATAATAATACTGACCTACCTCAAA
GGGCAGTTTTGAGGCGTGACTAATGCTTTTTATAAAGCATTTTGGGATCCTTCAGCAGAG
GAATTCTCTTAAGTCCTGAGTATTTTTATAATAACAGTATCCACCATGAACTGTGTCCAC
CATGAACCCTGTGTCCTGGATGCTGTCATTAATCTTTATGGTTCTCTCTGAGAAATTGAA
TAAACCCAATAGATAAGTGGTGGATAACTAGTCAGACAGAATCTGAGAATGCATAAACTC
ATTGCCATGGAAACATACACAGGATACCTTTTCCTTGATTGGGTGGGATTTTTTCCCCTT
TTTATGTGGGATAGTAGTTATTTGTGGCCTAAGAATAATTTTGGAATAATTTCTATTAAT
ATCAACTCTGAAGCTAGTTGTACTGATCTGAGATTGTGTTTGTTCATAATAAAAGGGAAG
TGAATCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               168-280, - strand, RNAz p=0.603629
               

               
               932-1032, - strand, RNAz p=0.714759

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-280, - strand, RNAz p=0.603629
               

               
               932-1032, - strand, RNAz p=0.714759

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AF132203, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF132203, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               14-1379, gnl|bosTau2|chr26 (12717855-12719188)
               

               
               14-1379, gnl|Hg17|chr10 (102113212-102114568)
               

               
               14-1379, gnl|Mm7|chr19 (44199319-44200724)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1379, gnl|bosTau2|chr26 (12717855-12719188)
               

               
               14-1379, gnl|Hg17|chr10 (102113212-102114568)
               

               
               14-1379, gnl|Mm7|chr19 (44199319-44200724)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

Help | Less info


               
               fat (20.1976)
               

               
               ski (3.22817)
               

               
               mgm (2.70514)
               

               
               cbr (1.27975)
               

               
               fbs (1.05208)
               

               
               spc (0.680195)
               

               
               ste (0.676041)
               

               
               hyp (0.42851)
               

               
               csk (0.422238)
               

               
               tes (0.415628)
               

               
               cov (0.396458)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               cag (0.302389)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (20.1976)
               

               
               ski (3.22817)
               

               
               mgm (2.70514)
               

               
               cbr (1.27975)
               

               
               fbs (1.05208)
               

               
               spc (0.680195)
               

               
               ste (0.676041)
               

               
               hyp (0.42851)
               

               
               csk (0.422238)
               

               
               tes (0.415628)
               

               
               cov (0.396458)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               cag (0.302389)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	168-280, - strand, RNAz p=0.603629
	932-1032, - strand, RNAz p=0.714759

	14-1379, gnl\|bosTau2\|chr26 (12717855-12719188)
	14-1379, gnl\|Hg17\|chr10 (102113212-102114568)
	14-1379, gnl\|Mm7\|chr19 (44199319-44200724)

	fat (20.1976)
	ski (3.22817)
	mgm (2.70514)
	cbr (1.27975)
	fbs (1.05208)
	spc (0.680195)
	ste (0.676041)
	hyp (0.42851)
	csk (0.422238)
	tes (0.415628)
	cov (0.396458)
	rec (0.346141)
	fhi (0.339155)
	mga (0.32041)
	cag (0.302389)
	liv (0.292569)
	fce (0.271592)
	lyg (0.266205)
	ute (0.265569)
	ova (0.258264)
	sug (0.254582)
	thg (0.253582)
	cly (0.241284)
	cbe (0.239234)
	nms (0.213858)
	fcc (0.197785)
	nlu (0.191681)
	eye (0.170503)
	nco (0.161734)
	tbr (0.154178)
	eli (0.151814)
	lun (0.150489)
	isp (0.150376)
	spl (0.143184)
	lnt (0.142308)
	ssp (0.13552)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)